KEGG   Ziziphus jujuba (Chinese jujube): 107415699
Entry
107415699         CDS       T04794                                 
Name
(RefSeq) sm-like protein LSM3B
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03018  RNA degradation
zju03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107415699
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107415699
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zju03019]
    107415699
   03041 Spliceosome [BR:zju03041]
    107415699
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107415699
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107415699
Spliceosome [BR:zju03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107415699
 Complex C
  U2 snRNP components
    107415699
SSDB
Motif
Pfam: LSM TIG_SUH
Other DBs
NCBI-GeneID: 107415699
NCBI-ProteinID: XP_015879569
UniProt: A0A6P3YVQ3
LinkDB
Position
2:complement(join(28974916..28974996,28975723..28975818,28977325..28977441))
AA seq 97 aa
MASEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTIE
IDDETYEEIVRTSKRMVPFLFVRGDGVILVSPPLRTA
NT seq 294 nt   +upstreamnt  +downstreamnt
atggcgagcgaggaagagagcacagtgaaggagccgttggacttgataaggcttagcctc
gacgagcgtatctacgtcaagctccggtctgaccgtgagctccgcggcaagcttcatgct
tatgatcagcatttgaatatgattcttggtgacgttgaagaaatagttactactattgaa
attgatgatgaaacatatgaagagattgtgcggacctcaaagcgcatggttccttttctc
tttgttagaggagatggtgtcattctcgtttcacctcctttaaggacagcttga

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