KEGG   Ziziphus jujuba (Chinese jujube): 107434888
Entry
107434888         CDS       T04794                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X2
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107434888
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zju03021]
    107434888
Enzymes [BR:zju01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     107434888
Transcription machinery [BR:zju03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     107434888
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 Rep_Org_C
Other DBs
NCBI-GeneID: 107434888
NCBI-ProteinID: XP_015901884
UniProt: A0A6P4BRI1
LinkDB
Position
6:complement(join(26163481..26163666,26163882..26163993,26164336..26164595,26165339..26165476,26165625..26165798,26165907..26166166,26167229..26167377,26168164..26168282,26168363..26168429,26168570..26168739,26169612..26171510,26171629..26171724,26171851..26172006,26172605..26172799,26172883..26172936,26173831..26173955,26174042..26174162,26175460..26175546))
AA seq 1455 aa
MGSEFYEDDQVPLALIDGLTFYVSTQADTEKMSVISIDAANGVTDPRLGVPNPSSQCSTC
GASDLKSCEGHFGHIKFPFTILHPYFLSEVVQILNKICPRCKSTRQSRQVKGPNSITGYH
QPTGCSYCIGSSSTMKFKVSSKDLFSRSTITVEVNDKLLEKFKSTDDFWDFIPKDAQQEE
SCMKPNKRVLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSN
GQRLIFDERTRAYKKLVDFRGAANDLGSRVLDCLKISKLSIGPNPSKDLVIGQQKSIRDS
PSKTCGLRWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLD
KSDGCWNLRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQH
SLIALSVKVLPITSVVSINPICCSPFRGDFDGDCLHGYVPQSVDTRVELRELVALDRQLT
NRQSGRNLLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPV
WTGKQLFSMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCLGHV
IDILHAAQEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKRLV
NYFQEFLIENNTEDNQRNVSIQMEYLLYKKQTSAELSQVSIDAFKQVFRDIQSLAYKYGG
KDNSLMVMFKAGSKGNLLKLVQNCMCLGLQHSLIPLSFGLPHQLSCIAWNNHKACGLTQK
VDASPKYCKSYIPCAVVESSFLSGLNPLECFVHSVTCRDSSFSDNAELPGTLHRRLMYFL
RDLYAAYDGTVRNAYGNQLVQFAYSSDVPVCSVLGSEPVGSLSACAISEAAYSALDQPIS
VLETSPLLNLKRVLECGSKKSSADQTMSLYLSEELGRQRHGFEYGALEVKDHLEGLIFSE
VVSTVMIMFSPQTGSKTCLSPWVCHFHICKDILRRRRLNVHSIIDSLHLRCKSAQTESKT
NFSKLQIMNRNCSEADTHEKDKDPCCIVVSIPENSKNSSIELDMVQNVVIPSLLGTVIKG
FREIKKVDILWKDRPKISKAIHGSSGELYLRVSMSGSTSRTRAWSMLLNDSLPIMDMIDW
SRSHPDNIKEFCVSYGIDAGWKYFLNNLESAISDIGKTILPEHLLLVADSLSVTGQFVGL
NAKGIAQQKEHASSSSPFMRACFSTPGAHFIKAAKAGVTDRLQGSLDALAWGKVPAMGTG
GRFDIIYSGKGHEIAKPADVYDLLGSQISSDKQNEIKMSTDQNHTSNKYDTQFLYGFGGS
VSKGFTKLGIAKSFIRKFFTPKDVQNLSHKLKHILHKYPIDHKLDDADKSTLMMTLYFHP
RRDVKVGAGIQDIKVVNHPDHENSRCFMLLRTDGTSEDFSYHKCVHGALEIVAPVRAKSY
WSKLSQQGFEEAGCH
NT seq 4368 nt   +upstreamnt  +downstreamnt
atgggcagtgaattctacgaggatgatcaggttccattggctctcatagatggcctaacc
ttttatgtttcaactcaggcagacactgagaagatgtctgttatatctatagatgctgcc
aatggagtcaccgatcctaggttgggtgtcccaaatccatcttctcagtgctctacatgt
ggtgcaagtgatttgaagtcttgtgaaggtcattttgggcacatcaaatttccattcact
atactccatccctacttcctatcggaagttgtacaaattctaaacaagatttgcccaaga
tgtaaatctactaggcaaagtcgtcaggtcaagggccctaattccataactggttatcat
cagccaacaggttgcagctattgcattggaagttcatcgaccatgaagtttaaagtttcc
tcaaaagatctttttagcagaagtacaattacagtagaggtaaatgacaaattgctagag
aaattcaagagtacagatgatttttgggacttcattccaaaggatgcacaacaagaagaa
agttgtatgaaaccaaacaagagagttctttcacatgcccaggtccattatttgttgaat
gccattgatcctgacttcataaaaaaatatgttgcaaggacagattcactttttctcaac
tgtttccctgtaactccaaattctcatcgtgtgacagaatttataaattcattttctaat
gggcaacgattgatttttgatgagcggacgagggcatataaaaaattagttgattttaga
ggagcagcaaatgatttgggttctcgtgttttagactgtctaaaaatttccaagctaagc
ataggaccaaatccaagtaaagatttggttattggccagcaaaaaagcattagagattct
ccttctaaaacatgtggtttgaggtggatcaaagatgtgatccttgggaagcgaagtgat
cattgtttccgcatggttgttgttggtgatccaaacataaagctcaatgaaattggcata
ccatgtcatattgcagagagaatgcatgtttccgagcgtttgaacagatggaacttggac
aagtcggatggctgttggaatttacgccttattgagaagggagagatctatgttcgaaga
aataataaattggtccgtgtacgccctaccgatgaactgcatataggggacactatttat
aggcctctaagtgatggagatattttgttgataaataggcctccttccatacatcagcat
tcccttatagctctatctgttaaggtacttccaataacatctgttgtatcaataaaccca
atatgctgctctccttttcgtggtgattttgatggtgattgccttcatggctatgtccct
caatcggttgataccagagttgagctcagggagcttgttgctttagacaggcaattaact
aataggcaaagtggtaggaacctgctttcatttagtcaagacagtttaactgctgctcat
ttgataatggaggatagtgtacttttgaatctttttgaaatgcaacagctcgaaatgttc
tgtttgcatcaacggatgttgccagcaattattaaagctccgtcacttgatggtccagtt
tggactggaaagcaattgttcagcatgctcctgccttcaggctttgattatgttgatgct
tcaaatggtgtttgtattagaaatggggagcttgtgtctttttctgaaggatcttcttgg
ttgcgtgatatagatggcaaccttttccaaagtcttataaaatattgcctcggtcatgta
attgacatcttgcatgctgctcaggaagttctttgtgaatggttgtcaatgaggggcttg
agtgtttctctcgcagatttatacctcactgctgactcacactcacgggaaaagatgatg
gatgaaatcttctttggtctgcaagaagctgagcagacctgtgcgttcaaacggctagtc
aattattttcaggaattcctaatagagaataatacagaggataatcaacggaatgtttct
attcagatggaatacttgctctataagaagcagacatcggctgaacttagccaagtttct
attgatgctttcaagcaagtgtttagggatattcaaagtttggcctacaaatatggaggt
aaagacaattccctgatggttatgtttaaggctggaagcaaagggaatttgctgaaatta
gttcaaaattgcatgtgtcttggcttgcaacattccctgattcctttatcatttgggctt
ccccatcagctctcatgtattgcgtggaataatcacaaggcatgtggtttaacccaaaag
gtggatgcttctcctaaatattgcaagtcttacatcccttgtgccgtcgttgaaagttct
ttcctctctggcttaaatccattagaatgttttgttcattcagttacatgtagagatagt
tctttcagtgacaatgctgaacttcctgggactctgcaccgaaggcttatgtacttcttg
cgtgatttgtatgctgcttatgatggaacggtgagaaatgcgtatgggaaccagcttgtt
cagtttgcttatagcagtgatgttccggtttgcagtgtattaggtagtgaacctgttggt
tcattgtctgcttgtgccatttctgaagctgcatacagtgctttggatcagccaataagt
gtacttgaaacttctcctctgctaaatctgaagagagtcttggaatgcggctcaaaaaaa
agtagtgctgaccaaactatgtcactatatctgtctgaggaacttggaagacagagacat
ggttttgagtatggagcgttagaggtcaaggatcatttggagggactaatattttcagaa
gttgtttctactgtcatgataatgttctcaccacagaccggaagcaagacatgtctcagt
ccttgggtttgccactttcatatatgcaaggacatactgagaagaagaagactaaatgtg
cattctataattgattcccttcatctacggtgtaagtctgcccaaacagagtcaaaaaca
aatttttcaaagttgcagataatgaacaggaactgttctgaagctgacacacatgagaaa
gataaggatccttgctgtatcgttgtcagtatacctgaaaactctaaaaattcttcgata
gagttggatatggttcaaaatgtggtgattccctctctgcttggaactgttataaaagga
ttccgagagatcaaaaaggttgatattttatggaaggataggccaaaaatatcaaaagca
attcatggttcttctggtgaactctacttaagagtgtctatgtcaggaagcaccagtaga
acaagagcttggagtatgctattgaatgattctctcccgattatggatatgattgattgg
tctcgtagtcatccagataatatcaaagaattctgtgtttcctatggaatagatgctgga
tggaaatatttcctcaataatttggagtcggcaatatctgatattgggaagactatactt
cccgaacatttgcttcttgttgcggattcgctgtcagttacaggacagtttgttggcttg
aatgcaaaaggcattgcacagcaaaaggaacatgcatcttcttcatcaccctttatgcga
gcatgcttttctacacctggtgctcactttatcaaagccgcaaaggctggagtcacagat
cgtcttcagggtagtctagatgcattagcatggggaaaggtgcctgctatggggaccggt
ggacggtttgatattatatattctggaaagggacatgaaattgcaaagcctgctgatgta
tatgacctgctgggtagtcaaatcagttctgataaacagaatgaaattaaaatgtctact
gatcaaaatcatacatccaacaaatatgatactcagtttttatatgggtttggtggttct
gtttcgaaaggatttaccaaattgggtattgcaaaatcattcataagaaagttttttacg
ccgaaagatgttcagaatctgtcacataaactgaagcatatcttgcacaagtatcccata
gatcacaagctagatgatgcagacaagtcaaccttgatgatgactttatactttcatccc
cgaagagatgttaaagttggtgctggaattcaggacattaaggttgtgaatcaccctgat
catgaaaactcgcgctgctttatgttgttaagaacagatggaacatccgaagatttttcg
taccacaaatgtgttcatggtgctctcgagattgtagctcctgtaagggcaaaaagctac
tggtcgaagttgtcacaacagggttttgaggaagctggctgtcactag

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