Zobellia laminariae: Q5W13_17285
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Entry
Q5W13_17285 CDS
T09239
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
zla
Zobellia laminariae
Pathway
zla03030
DNA replication
zla03410
Base excision repair
zla03420
Nucleotide excision repair
zla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q5W13_17285 (ligA)
03410 Base excision repair
Q5W13_17285 (ligA)
03420 Nucleotide excision repair
Q5W13_17285 (ligA)
03430 Mismatch repair
Q5W13_17285 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zla03032
]
Q5W13_17285 (ligA)
03400 DNA repair and recombination proteins [BR:
zla03400
]
Q5W13_17285 (ligA)
Enzymes [BR:
zla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q5W13_17285 (ligA)
DNA replication proteins [BR:
zla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q5W13_17285 (ligA)
DNA repair and recombination proteins [BR:
zla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q5W13_17285 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q5W13_17285 (ligA)
MMR (mismatch excision repair)
DNA ligase
Q5W13_17285 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q5W13_17285 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_ligase
HHH
HNOB
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WKX75406
LinkDB
All DBs
Position
3604615..3606612
Genome browser
AA seq
665 aa
AA seq
DB search
MQIKEQIESLRQELREHNHNYYVLDNATVSDFEFDTKLKELQALEAKHPEFYDESSPTLR
VGGTVTKNFDTVVHNERMYSLDNSYSKEDLEDWEKRMQRILGDAEVEFVCELKYDGASIS
ITYEDGKLVRAVTRGDGFQGDDVTTNVKTIKSVPLQLKGDYPPKFDIRGEIVLPFEGFAQ
MNAERIENGEDPYMNPRNTASGSLKLQDSAAVAQRPLDCLLYSIVGQNTGITSQWQMLEK
AREWGFKVPEVAKLSRSTDEVMAFVNKWDSGRHSLPYETDGVVVKVNSIQHQDELGFTSK
SPRWAMAYKFKAEQVSTLLNEITYQVGRTGSITPVANLEPVLLAGTTVKRASLHNADQIA
KFDIREGDTVFVEKGGEIIPKIVGVDFEKRPQDSKPTEYITNCPECHEPLVRTEGDAKHY
CVNYYGCPPQITGRIQHFISRKAMDIEGLGSETVELLYKEGLIDNYADLYTLTKEQVLPL
ERMAEKSAENLVKGVAESVKIPFERVLFGLGIRFVGETVAKKLARAYKNIDALMNASEES
LVAVDEIGERIASSVVEFFNNETNRSIIARLKSYGLQFSLSEEQLENQTDKLKGLTIVVS
GVFETVSRNELKKIIESNGGKVGSSISSKTAYLVAGDKMGPSKRTKAESLNVPIVTEGEF
LEMVE
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgcagataaaagaacaaatagagtcccttcgtcaagaattacgtgagcataaccataat
tactacgtgcttgacaacgccactgtatccgattttgagtttgacaccaagctaaaagaa
ttacaggcacttgaggcaaagcatcctgaattttatgatgaaagttcacctactttacgt
gtaggtggtacggtaaccaaaaattttgacaccgtagtgcacaatgaaagaatgtattcg
ctggataattcttactcaaaagaagatcttgaggattgggagaaacgtatgcaacgcatt
ttgggcgatgcggaagttgagtttgtttgtgaattgaagtatgatggtgcgtctattagt
attacctatgaggatggtaaattggtacgtgccgttactcgtggtgatggttttcaaggt
gatgatgtaaccacgaacgtgaaaactattaagtcagtaccattacagttaaaaggtgat
tatcctccaaaatttgatattagaggagaaattgtattgccttttgaaggttttgcacaa
atgaatgccgagcgtattgaaaatggagaggacccttacatgaaccctagaaatacggct
tcaggtagtttaaaattacaggatagtgcagcggtcgctcaaagaccattagactgcttg
ttatatagtattgtaggtcagaatacgggaataacttcacaatggcagatgcttgaaaaa
gcaagagaatggggttttaaagttcccgaagttgcaaaattgagccgctcaacagatgaa
gtaatggcctttgtaaacaaatgggattcaggacgccatagcttaccttatgaaacggat
ggagtagtagttaaagtgaatagtatacagcatcaagatgaattgggctttacctcaaaa
tcacctcgttgggccatggcttataaatttaaagcggagcaggtttcaaccctattaaat
gaaattacctatcaagtgggccgtacaggttcaataaccccggtggctaatctagagcca
gtacttttggcgggaactaccgtaaaaagggcgtcgttacacaatgccgatcagattgcg
aaatttgatattcgtgaaggtgatactgtttttgttgaaaaaggtggagaaatcatacca
aaaatagttggtgtagattttgaaaaacgtcctcaggattcaaaaccaactgaatatatt
acaaattgtcccgaatgtcatgagcccttggtccggacagaaggtgatgcaaaacattat
tgcgtcaactattatggttgtcctccccagattactgggcgaatccaacattttatatct
cgtaaagcaatggatatagagggtctaggaagtgaaactgtagaacttctttataaagag
ggactcatagataattatgcagatttatacacgctgaccaaagaacaagtactgcctttg
gaaagaatggcggagaagtctgctgaaaacttggtaaagggtgttgctgagtctgtaaag
attccttttgagcgcgttctttttggtttgggtattcggtttgttggtgagactgtagca
aagaaactagctagggcctataaaaatattgatgctttaatgaatgcatccgaagaaagt
ctggtagctgttgatgaaattggagaacgcattgcaagttctgtggtggagttttttaat
aacgaaactaaccgttcaataatagcccgtttaaagtcttatggattgcaattttcactt
tccgaagagcaattggaaaatcaaacggataagctaaaggggctcactattgttgtttct
ggggtgttcgagaccgtaagccgtaatgaacttaagaaaatcattgaaagtaatggaggt
aaggtgggttcaagcatatcttcaaaaactgcatatctggtagctggtgacaaaatgggg
ccgagcaaacggaccaaagcggaatcacttaatgtacctatcgttacagaaggtgaattt
ctggaaatggtagaataa
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