Zonotrichia leucophrys gambelii (white-crowned sparrow): 135442374
Help
Entry
135442374 CDS
T09958
Symbol
APAF1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
KO
K02084
apoptotic protease-activating factor
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04115
p53 signaling pathway
zle04210
Apoptosis
zle05164
Influenza A
zle05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
135442374 (APAF1)
04115 p53 signaling pathway
135442374 (APAF1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
135442374 (APAF1)
05168 Herpes simplex virus 1 infection
135442374 (APAF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
NB-ARC
APAF1_C
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
APAF-1-like_WHD
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
NBCH_WD40
CARD
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_Vps41
eIF2A
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_SCAP
WD40_RFWD3
CARD_2
Ge1_WD40
WD40_like
Beta-prop_NUP159_NUP214
PEP5_VPS11_N
Beta-prop_DCAF4
Beta-prop_WDR11_2nd
Beta-prop_Nup120_160
WDR54
Beta-prop_DCAF12
AAA_16
DUF2415
Dark_WHD
AAA_22
RAB3GAP2_N
Motif
Other DBs
NCBI-GeneID:
135442374
NCBI-ProteinID:
XP_064558193
LinkDB
All DBs
Position
1A:34623076..34654489
Genome browser
AA seq
1249 aa
AA seq
DB search
MDVKSRNYLLMNRQALENDIKTSYIMDRMISDEVLTLQEEERVKQQNTRKERAATLINII
LTKDNNSYRSFYNALLHEGYRDLAALLQDGIPAVSSGNRKSSMDGMTSYVKTILCEGGVP
QRPVVFVTRPKLVDAIKKKLYCLGSDPGWVTVYGMAGCGKTVLTAEALRDPQLLEDCFPG
GVHWISVGKQDKAGLLIKLQNLCSRLEHDSTLSQRPPLNIEEAKDRLRLLMLRKYPRSLL
VLDDIWDSWVLKAFDNQCQVLITSRDRSVTDAVAGNKYEVHVESGLAHEKGLEILSLFVN
MKISELPEQANTLVRECKGSPLVISLIGALLRDFPSRWEYYLRQLQNKQFRRIRKSSSYD
YEALDEAMSISVEQLDDNYKDYYKDLSILPKDVKVPTKVLCILWDMETEEVEDILQEFVN
KSLLFCDRNGKSFHYYLHDLQLDFLTEKNRNQLQELHKNIVNQYKKYYKLNTPVLSQEDC
MYWYNFLAYHMAGAKMQQELCDLMFSLDWIKAKTELVGPAHLIHEYVEYSSVLDQKDSTV
RENFQEFLSLNGHLLGRQPFPDIIQLGLCQPESSEVYQQAKLHAQRETGTFYLEWVNKKS
LKNLYRLVVRPHRDAVYHACFSKDRQRIASCGADKTLQVFKAESGERLLEINAHDDEILC
CAFSADGEFVATCSSDKKVKVWNSRTGQCRCVYEEHSEQVNCCQFNNKSGQYLLATCSND
TFIKIWDLNGKYCRNTMIGHENSVNHCRFSPNDEYVASCSTDGTVKLWEARSGNELKSIE
IKDFFKNADEQPDDVEVLVKCCSWSRNGSMILVVAKNKLLLFDINTCGLLTQVIVSHHST
IQYCDFCPGDELVAIALSHCSVELWNIKSLSKVAYCRGHMSWVHCVTFSPDGSLFLTSSD
DQTIRIWETKKVCKSSDAVLKSELDVVFHNGEVMILAIYNQKNLQLINGNTDQVIMQTEA
QESPISCCCLSEDLKFAAFGQESGTIKVLQLSDGKVLKSREAYRTSVQHCRFTPDCQTLI
SSAHDSIIQVWNWQLSECVFLRGHKEAIKDFRLLENSKLLSWSFDGTVKVWNITTGNPEK
DFACHGGAVLSCAVSPDGSKFSSASADKTAKIWSFESSSALHELKDHEACVRCCTFSPNN
KLLATGDDKGEIRIWDVLTGALLHFCSPVTVDEGEPTHGGWVTDLSFSPDSKMLVSSGGY
LKWWNVTTGESLQTFYTNGTNLKSIHVSPNFKVYVTVDNLGILYVLQKF
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcaagagtagaaactatttgcttatgaatcgtcaagcactggaaaatgacatc
aagacttcttatattatggatcgcatgatttctgatgaagtactgacattacaggaagag
gagagagtgaagcaacagaatacacggaaggagcgagcagctacgctaataaacattatt
cttacaaaagataataattcatataggtccttttataatgcactgctccatgaagggtac
agagaccttgctgcacttcttcaggatggcatccctgccgtctcgtccggtaacagaaag
agttcaatggatggaatgacttcctacgtgaagaccattctctgcgaagggggcgtacca
cagagaccagttgtgtttgtcactcgaccaaaactggtagatgctattaaaaagaagcta
tactgcttgggaagtgacccaggttgggtcacagtttatggaatggcaggctgtgggaag
actgttttaacagcagaagctttaagggatcctcagctcttggaagattgctttccagga
ggagttcactggatctctgttgggaagcaggacaaagcagggctgctgataaaacttcag
aatctctgcagtaggttggaacatgactccactctttcacaaaggccaccactgaacatt
gaggaggctaaagatcgtcttcgtttgctgatgttgcgcaaataccccagatctcttttg
gtcctggatgacatttgggattcctgggtgttaaaagcattcgataatcaatgtcaggta
ctgatcacaagcagggacaggagtgtaacagatgctgtggctggcaataaatacgaggtt
catgtggaaagtggactagcacatgagaaaggactggagattttatccctatttgtgaat
atgaaaatatcagaacttccagaacaagccaacactcttgtaagagaatgcaaaggttct
cctctagtgatatccttgataggtgcattactccgagacttcccgagccgctgggagtac
tatctcaggcagctgcagaataagcagtttagaagaataagaaaatcttcctcctatgat
tacgaagcccttgatgaagcaatgtccataagtgttgagcagctggatgacaattacaaa
gactactataaagacctctctatcctcccaaaagatgttaaagtacctactaaggttctc
tgtattctttgggatatggaaactgaagaagttgaagatatactacaggaatttgttaac
aaatcactgttgttctgtgatcgtaatgggaagtcattccattattatttacatgatctt
cagcttgactttctcacagagaagaaccgcaaccagcttcaggagttacataaaaacata
gtaaatcagtacaagaaatactacaagcttaatacacctgttctgtctcaagaggattgc
atgtactggtataactttctagcatatcacatggcaggtgccaaaatgcagcaggagctc
tgtgatcttatgttttctttggattggattaaagctaaaacagaattggtggggcctgct
cacctgattcatgaatatgttgaatatagttcagtcctggatcaaaaggatagcacagtg
cgtgagaatttccaggagtttctgtccttaaatgggcaccttcttggccggcagcccttt
cctgacatcatccagctgggcctttgccagccagagtcatcagaggtgtatcaacaggcc
aagctacacgctcaaagggaaacaggaacgttttatctggagtgggtaaataaaaaatcc
ttgaaaaatctctaccgcctggttgttcgtccgcatagagatgcagtttaccatgcctgc
ttttctaaggacagacaaagaatagcatcatgtggagctgataaaactcttcaggtgttt
aaagcagaaagtggagagagactcctggagataaatgcccacgatgatgaaatactctgt
tgcgctttttctgcagatggtgaatttgtagcaacttgttcaagtgataaaaaagtcaag
gtctggaattcaagaacaggccagtgtaggtgtgtgtatgaagagcactctgagcaggtc
aattgctgccagttcaataacaaaagtggtcagtaccttctggccacctgctcaaatgac
actttcatcaaaatttgggatttgaatggaaaatactgtagaaatacgatgatagggcat
gaaaattctgtcaatcactgcagattttcaccaaatgatgagtatgttgctagctgctca
acagatggaacagtaaagctttgggaagcacgctcaggaaatgaactgaaaagcattgag
ataaaagatttctttaaaaatgcagatgaacaaccggatgatgtggaggttttagtaaaa
tgttgttcttggtccagaaatggtagcatgattttggtggtagccaaaaataagcttttg
ctttttgacatcaacacctgtggtttgttaactcaagtcattgtcagccatcacagcaca
atccaatactgtgatttctgtcctggggatgagttagtggcaattgctttgtctcactgc
tctgttgagttatggaatattaagtctttatcaaaagtggcatattgcagaggacacatg
agctgggttcactgtgtgacattttcaccagatggatctttatttctgacttcatctgat
gaccagacaatacgtatctgggaaacaaagaaggtgtgcaagtcttctgatgctgtgctg
aagagtgaactagatgttgtgtttcacaatggtgaagtgatgattttagccatctacaat
cagaagaatttacaacttatcaatggaaatacagaccaagttattatgcagacagaagct
caagaatcccccatttcctgctgttgcttaagtgaagatcttaaatttgcagcttttggg
caagagagtggaacaataaaggtactgcagttgtcagatgggaaggttctgaagtcccgg
gaggcctacaggacatctgtgcagcactgtcgatttacacccgactgtcagactctcatc
tcaagtgctcatgattcaattatacaggtttggaattggcaattgagtgaatgtgtgttt
ctaagagggcacaaggaagcaatcaaggattttagacttctggaaaattcaaaacttctc
tcttggtcatttgatggaactgttaaggtttggaatatcactactggaaacccagaaaaa
gattttgcttgtcatggaggcgctgttctttcctgtgctgtttcacctgatggtagtaaa
ttttcatctgcttctgctgacaaaactgcaaagatatggagctttgaaagttcatctgct
cttcatgaactgaaggaccacgaagcctgtgtgcggtgctgcactttctctcctaataac
aaactgctggccactggagatgacaaaggagaaataaggatttgggatgttttaacaggt
gcattacttcatttctgctcccccgttactgtagatgaaggagagccaacacatgggggt
tgggtaacagacctctccttttctcctgacagtaaaatgcttgtgtcatctggaggctat
cttaagtggtggaatgtaactactggagaatccttacaaaccttctacacaaatggaaca
aacctcaagtcaatacatgtatcccctaatttcaaagtatatgtgactgttgataatctt
ggcattctttatgtactacagaaattctga
DBGET
integrated database retrieval system
