Zonotrichia leucophrys gambelii (white-crowned sparrow): 135448474
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Entry
135448474 CDS
T09958
Symbol
THBS1
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04115
p53 signaling pathway
zle04145
Phagosome
zle04148
Efferocytosis
zle04350
TGF-beta signaling pathway
zle04510
Focal adhesion
zle04512
ECM-receptor interaction
zle04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
135448474 (THBS1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135448474 (THBS1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
135448474 (THBS1)
04148 Efferocytosis
135448474 (THBS1)
09143 Cell growth and death
04115 p53 signaling pathway
135448474 (THBS1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
135448474 (THBS1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
135448474 (THBS1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zle04131
]
135448474 (THBS1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
zle00536
]
135448474 (THBS1)
Membrane trafficking [BR:
zle04131
]
Endocytosis
Phagocytosis
Opsonins
135448474 (THBS1)
Glycosaminoglycan binding proteins [BR:
zle00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135448474 (THBS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
cEGF
TSP1_ADAMTS
TSP1_CCN
Laminin_G_3
EGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
135448474
NCBI-ProteinID:
XP_064570614
LinkDB
All DBs
Position
5:26997499..27013342
Genome browser
AA seq
1177 aa
AA seq
DB search
MGPATALCLLLLVLGGSETKRTAESRNDDNSVFDLFELIGFMKKGAGRRAPGVYLVKGPE
SSSPAYRIEDASRIPAVSDSKFQDLLDAIHAEKGFILLATLRQAKKSRGTLLSVEQKDGS
GHVFSLVSNGKAGSLDLSLSADGKQQLVSVEDVLLATGHWKNITLFVQEDRAQLYVGCEK
MENAELDIPIQNIFTRDLASSARLRIAKGGVNDNFQGLLQNVRFVFGTTLETILRNKGCS
SSTSAIITLDNPINGSSPAIRTNYIGHKTKDIQAVCGFSCDELTNMFVEMQGLRSMVTAL
QDRVRKVTEENEIIAKVVQITPGACIHNGVLHKNKEEWTIDSCTECTCQNSATICRKVSC
PLMPCSNATVPDGECCPRCWPSDYADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLNNRC
EGSSVQTRTCHLQECDKRFKQDGGWSHWSPWSSCSVTCGTGIITRIRLCNSPVPQLNGKP
CEGEARENKACQKDPCPINGNWGPWSPWDACTVTCGGGLQKRSRLCNNPEPQYGGKTCVG
EARGTQVCNKQDCPIDGCLSNPCFAGATCTSAPDGSWKCGACPAGYHGDGIHCQDIDECK
EVPDACFVFNGVHRCENTEPGYNCLPCPPRFTGTQPFGRSVEDAMSNKQVCKPRNPCTDG
THDCNKNAKCNYLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHC
KKDNCPNLPNSGQEDYDKDGIGDACDSDDDDDGIPDDRDNCPFIYNPQQYDYDRDDVGDR
CDNCPYNHNPDQTDTDNNGEGDACAIDIDGDGVLNERDNCQYVYNVDQRDTDLDGVGDQC
DNCPLEHNPDQEDTDSDRIGDQCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDA
CDHDDDNDGIPDDKDNCRLVANPDQADSDGDGRGDACKDDFDQDSVPDIDDICPENVEIS
ETDFRKFQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSGTFF
INTERDDDYAGFVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKVVNSTTGPG
EHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKIMA
DSGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggggccagcgactgctctctgcctccttctcctcgtgctaggcggctcagagaccaag
cgcactgcagagtccaggaatgatgataacagcgtcttcgatctctttgaactcattggt
ttcatgaagaagggagctgggcgccgggcccccggggtgtacctggtgaagggaccagaa
tcctccagccctgcttaccgcattgaagatgccagtcgcatccctgctgtgtctgactcg
aagttccaagacttattagatgccatccatgctgagaagggcttcattctcctggccact
ctccgtcaagccaagaagagcagaggcacgctgctctctgtggaacagaaagatggctct
ggtcatgtcttcagtctagtatcaaatgggaaggcaggctccctggacctgagcctttct
gctgatggcaagcagcagttagtgtcagtagaggatgtcttgctagctacaggacactgg
aagaatatcaccctgtttgtgcaggaggaccgagctcagctctatgtggggtgtgagaaa
atggagaatgctgagctggacatccccatccagaacatcttcactagggacctcgccagc
agtgccaggctccgtattgccaaagggggagtcaatgacaacttccagggtctgctgcag
aatgtgcggtttgtgtttggaacaactctggaaactatcctgcggaacaaaggctgctcc
agctccactagtgcaatcattactttggacaaccccatcaatggttccagcccagctatc
cgcactaattacattggccataaaacaaaggacatccaagcagtctgtggattttcctgt
gatgaactaacaaatatgtttgtggaaatgcaagggctacggtccatggttacagcactt
caggacagagtccgaaaagtgactgaagagaatgaaatcattgccaaagtagtccagatc
actcctggagcgtgcattcataatggagtcttgcacaaaaataaagaggagtggactatt
gacagctgcactgaatgtacttgccagaactctgccactatatgccggaaagtgtcctgt
cctctcatgccttgttccaatgccactgtgcctgatggggagtgctgccctcggtgctgg
cctagcgactacgcagacgatggatggtctccttggtctgaatggacctcgtgttctgtg
acctgtggtaatgggattcagcagagaggccgatcctgtgacagtctcaacaaccgctgt
gaaggctcctctgtgcagactaggacttgccaccttcaggagtgtgataagagatttaaa
caggatggtggctggagtcactggtcaccatggtcatcatgttctgtcacttgtggcacg
ggcatcattactagaattcgtctttgcaactctccagtaccacagctgaatggcaaaccg
tgtgagggtgaagcaagagaaaacaaagcctgccagaaagatccttgcccaattaatggc
aactggggaccatggtctccatgggatgcttgcacagtgacatgtggaggaggacttcag
aagcgaagccgtctctgcaataatcccgagcctcagtatggtgggaagacttgtgtaggt
gaagctagagggactcaggtctgcaacaaacaggactgtccaattgatgggtgtctgtct
aatccctgctttgcgggggctacgtgcaccagtgcccctgatggttcctggaagtgtggt
gcctgtcctgctggctaccatggtgatggcattcactgccaagacattgatgagtgcaaa
gaggttcctgatgcctgctttgtgttcaacggagtgcacaggtgtgagaatactgaacct
gggtacaactgtctgccttgcccaccacgtttcactggaacacagccatttggtcgcagt
gttgaggatgccatgagtaacaaacaggtctgcaagccacgtaatccatgcacagatgga
acacatgactgcaacaagaatgccaaatgcaattaccttggccactttagtgaccccatg
tatcgctgtgaatgtaaaccaggctatgccggcaatggcatcatctgtggagaagataca
gatttggatggatggccaaatgagaacctggtttgtgttgccaatgctacttaccactgt
aaaaaggataactgccctaatctgcctaactcagggcaggaagactatgataaggatggg
attggtgatgcctgtgacagtgatgatgatgatgatggcattcctgatgatcgggacaac
tgtccattcatctataacccacagcagtatgactatgacagggatgatgttggtgaccgc
tgtgacaactgtccctacaatcacaaccctgaccaaactgacactgacaacaatggagaa
ggagatgcatgtgccatagatattgatggagatggggtgcttaatgaaagggacaactgc
cagtatgtctacaatgtagaccagagggatacagacttggatggtgttggagatcagtgt
gataactgtccactggaacacaaccctgaccaggaagacactgattctgaccgcataggt
gatcagtgtgacaacaaccaggacatagacgaagatggtcatcaaaataaccttgataac
tgcccctatgtgcccaatgccaatcaagctgaccatgacaaggatggcaaaggtgatgcc
tgtgaccatgatgatgacaatgatggtatccctgatgacaaagacaactgcagactggtt
gccaacccagatcaagctgattctgatggtgatggacgtggagatgcttgcaaagatgac
tttgaccaagacagtgtgccagacattgatgatatctgccctgaaaatgtggaaattagc
gagaccgacttccgaaaatttcagatgattcccctggatcccaaaggaacatcccaaaat
gatccaaactgggttgttcgtcaccagggtaaagaactggttcagacagtcaactgtgac
cctggccttgcagtcggttttgatgaattcaacgctgtggacttcagtggtaccttcttt
atcaatacagaaagggatgatgattatgctggctttgtatttggctaccaatctagcagt
cgtttctatgttgtcatgtggaagcagatcacccagtcttactgggactccacaccaacc
aaagctcaaggctattcaggtctctccatcaaagttgtgaattccaccactggtccagga
gaacaccttcgtaatgctctgtggcacacaggaaacactcctggccaggtgagaactttg
tggcacgatcctcgtcacataggctggaaagacttcactgcatacagatggcgacttagc
catagaccaaagaccggctacatcagggttgtaatgtatgaagggaagaaaatcatggca
gactcaggaccaatctacgataaaacctatgctggtggtcggctaggattatttgtcttc
tctcaagaaatggtgttcttctcagaccttaaatatgaatgcagagattcgtaa
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