KEGG   Zonotrichia leucophrys gambelii (white-crowned sparrow): 135449970
Entry
135449970         CDS       T09958                                 
Symbol
SMNDC1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
zle  Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zle00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    135449970 (SMNDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:zle03041]
    135449970 (SMNDC1)
Spliceosome [BR:zle03041]
 Complex A
  U2 snRNP components
   U2 related factors
    135449970 (SMNDC1)
 Complex B
    135449970 (SMNDC1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    135449970 (SMNDC1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR DUF2067 TraX-like
Other DBs
NCBI-GeneID: 135449970
NCBI-ProteinID: XP_064573584
LinkDB
Position
6:10011470..10021283
AA seq 238 aa
MSEDLAKQLASYKAQLQQVEAALSGNADNEDLLKLKKDLQEVIELTKDLLSTQPSETLAS
SDSSASALPSHSWKVGDRCMAIWSEDGQCYEAEIEEIDEENGTAAVTFAGYGNAEVTPLF
NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ
FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcagaagaccttgctaagcagttggccagctacaaagctcagctccagcaagtcgag
gctgccttatctggcaatgcagacaatgaggatttactgaaactgaagaaagacttacag
gaagtcatagagttaaccaaagatctcctttcaacacaaccttcggaaaccctcgcgagt
tccgacagctccgcgtccgccctgcccagtcactcctggaaggttggggacaggtgtatg
gccatatggagtgaggatggacagtgttacgaagctgagattgaagaaatagatgaggag
aatggaacagctgcagtgacatttgctggatatggcaatgctgaagtcacacctctgttc
aacctcaagcctgtggaagagggaaggaaagcaaaagaggacagtggcaacaaacccatg
tccaaaaaagaaatgatagcccagcaacgagagtataaaaagaagaaagctttgaaaaaa
gctcagagaattaaagaacttgaacaggaacgagaggaccagaaagtcaagtggcaacag
tttaacaacagagcctattctaaaaacaaaaaaggccaggtgaaaaggagtatttttgct
tcccctgagagcgtaactggcaaggttggcgttggaacatgtggaattgcagacaaacct
atgacacagtatcaagatacctctaaatataatgtcaggcatctgatgcctcagtaa

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