Zonotrichia leucophrys gambelii (white-crowned sparrow): 135451103
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Entry
135451103 CDS
T09958
Symbol
PTPRF
Name
(RefSeq) receptor-type tyrosine-protein phosphatase F isoform X1
KO
K05695
receptor-type tyrosine-protein phosphatase F [EC:
3.1.3.48
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04514
Cell adhesion molecules
zle04520
Adherens junction
zle04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
135451103 (PTPRF)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
135451103 (PTPRF)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
135451103 (PTPRF)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zle01009
]
135451103 (PTPRF)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
zle04515
]
135451103 (PTPRF)
Enzymes [BR:
zle01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
135451103 (PTPRF)
Protein phosphatases and associated proteins [BR:
zle01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
135451103 (PTPRF)
Cell adhesion molecules [BR:
zle04515
]
Immunoglobulin superfamily
Type II RPTP family
135451103 (PTPRF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_2
ig
fn3_2
PTP-SAK
Tc-R-P
DSPc
Interfer-bind
Y_phosphatase3
V-set
C2-set_2
PTPlike_phytase
PTP-NADK
Ig_C17orf99
Fn3_PTPRU
Insulin_TMD
DUF3377
ICAM_N
TMEM154
Motif
Other DBs
NCBI-GeneID:
135451103
NCBI-ProteinID:
XP_064576040
LinkDB
All DBs
Position
8:19922797..20297184
Genome browser
AA seq
1932 aa
AA seq
DB search
MVPNFCIPVLTVPAAILCCLMLPLAGADSKPTFMKAPEDQIGISGGVASFVCQATGEPKP
RITWMKKGKKVSSQRFEVIEFDDGSGSVLRIQPLRVHRDEAIYECTATNSVGEINTSAKL
TVLEEDHLPAGFPTIDMGPQLKVVEKARTATMLCAASGNPDPEISWFKDFLPVDTATSNG
RIKQLRSGGTPIRGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSI
PPSNHEVMPGGSVNLTCVAVGAPMPYVKWMAGVEELTKEDEMPVGRNVLELNNIMQSANY
TCVAISSLGMIEATAQITVKALPKPPTEPLVTETTATSVTLTWDSGNSDPISYYVIQYKP
KSLEGQFQEVDGVATTRYSIGGLSPFSEYEFRVIAVNNIGRGPPSELVEARTGEQAPSSP
PLKVQARMLSASTMLVQWEQPEEPNGQIRGYRVYYTTDPHLPLSMWQKHNTDDSHLTTVG
SLITGTTYSIRVLAFTSVGDGPPSDIIQVKTQQGVPAQPADFQAEAESDTRILLTWLPAS
QERITKYELLYWEGEDGTQWCAGTIGTWHSGFCQKVEFDPTSSYAVEGLKPDTLYKFRLG
ARSELGVGVYTPTVEARTAQSTPSAPPQEVECVSTSSTTIRVSWVPPPAQSRNGLITQYS
IAYQAVEGDDNTKHVVDGIGREHSSWEIKDLEKWTEYKVWVRAHTDVGPGPESIPVHVRT
DEDVPSAPPRKVEVESVNSTAIRVSWKLPISNKQHGQIRGYQVTYVKLENNEPRGQPVIK
DVMLSEAQWRAEDSVDHETVIGGLLPETTYSVTVAAYTTKGDGARSKPKVITTTGAVPGK
PTMMISTTAMNTALIQWHPPKEMVGELLGYRLQYRRLDEEKMNTIDFGKRDHHYTVTNLH
KGATYLFKLSAKNRAGPGEEFEKEITTAEDVPSGFPQNLRVVGLTTSTTEVAWDPPVLAE
RNGKIVNYTVVYRDINSQQDLANITKDTSITLTNLKPDTTYDIKVRARTNKGAGPLSPSI
QSRTMPVEQVFAKNFRVNAVMKTSVLLSWEVPDSYKSAVPFKILYNSQSVEVDGHSMKKL
ISDLQPDTDYSFVLMNRGSSAGGLQHLVSIRTAPDVLQSKPIATNKYIQEGKFTLTLPKV
QTTVPVRWYYIVVVPADQSTSTLTARWRTPDEMELDQLLEAISQGSQSRRQRRQADRLKP
YIAAQVDVLPETFTLGDEKNYKGFYNKPLSQDLSYRCFVLASLEDGDTKRYAASPYSDEI
VMEVASAKQQDEPEMLWVMGPVLAVILIIIIVIAILLFKRKRAHSPSSKDEHSIGLKDSL
LAHSSDPVEMRRLNYQTPGASVPCCPNISSMRDHPPIPVSDLADNIERLKANDGLKFSQE
YESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINANYIDGYR
KQNAYIATQGPLPETLSDFWRMVWEQRTATIVMMTRLEEKSRVKCDQYWPSRGTETYGMI
QVVLLDTVELATYTVRTFALYKNGSNEKTELRQFQFMAWPDHGVPEYPTPILAFLRRVKA
CNPTDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTED
QYIFIHEALLEAATCGNTEVPARNLFAHIQKLTQVPPGESVTEMELEFKLLANSKAHTSR
FISANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGP
LAETTEDFWRMLWEHDSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMP
QYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPI
TVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQMVKTLRTQRPAMVQTEDQYQLCYRAA
LEYLGSFDHYAT
NT seq
5799 nt
NT seq
+upstream
nt +downstream
nt
atggtgcctaacttctgcatcccagtactcactgtgccagcagccatcctctgctgcttg
atgctgcctttagcaggagcggacagcaagccaacgtttatgaaggctcctgaagatcag
attgggatttctggaggagtggcctcttttgtgtgtcaggcaacaggagagcccaaacct
cgtatcacgtggatgaagaaggggaagaaagtcagttctcagcggtttgaggtgatcgag
ttcgatgatggctcggggtcggttctgcggatccagcccctgcgtgtccatcgggatgag
gccatctatgagtgcacagccaccaacagcgtgggggagataaacaccagtgccaagtta
acagtgttagaagaagaccacctcccggctggcttccccaccatcgacatgggcccgcag
ctgaaggtggtggagaaggcccgcacggccaccatgctctgtgctgccagtgggaaccct
gaccccgaaatctcctggttcaaggacttcctgcccgtggacactgccaccagcaatggg
cgaatcaagcagctccgctcgggtggtacaccgatcagaggagccctgcaaatagagaac
agtgaggagtcagaccaaggcaaatacgaatgtgttgcaaccaacagtgcaggaacccgc
tactctgccccagccaacctttatgttcgagtgcggcgtgttgctcctcgattctctatc
cctccgagcaaccacgaggtgatgcctggggggagcgtgaacctcacctgcgtggcagta
ggtgctccaatgccctatgtgaagtggatggctggtgtggaggagctgaccaaagaagat
gagatgcccgtcggtaggaacgtcctggagctcaataacatcatgcagtctgccaactac
acctgcgtggccatctcttcccttggcatgatcgaagccacagcccagatcactgtcaaa
gccctgccaaaacctccaacagagccattagtgactgaaacaacagctaccagcgtgacc
ctcacctgggattcaggcaactctgaccccatttcatattacgtcatccagtacaagccc
aaatccctggagggccagttccaggaggtggatggtgtggcaaccacccgctacagcata
ggtgggctcagccccttctccgagtacgagttccgggtcatcgcagtcaacaacatcggc
aggggtccccccagcgagctggtcgaggccaggacaggagagcaagctccttcaagtcca
cccctcaaagtgcaggcacggatgctgagtgccagcaccatgctggtgcagtgggagcag
ccggaggagcccaatgggcagatccgagggtaccgcgtatactacaccacggacccgcac
ctgcctttgagcatgtggcagaagcacaacactgatgacagccacctcaccaccgtgggc
agcctcatcacaggcaccacctacagcatccgtgtcctggccttcacttcggtgggcgac
gggcccccttcggacatcatccaggtcaaaactcagcaaggggttcctgcccagccagct
gacttccaggcagaagcagagtctgatacccgcatcctgttgacatggctgcccgcctct
caggaacgcattactaaatatgagctgctgtactgggaaggggaggacggcactcagtgg
tgtgcaggaacaataggaacatggcattctggtttctgccaaaaggtggagtttgaccca
acctcctcctatgcggtggaaggtctcaaaccagacacgttgtataagttccgtctgggt
gcccgatcagagctgggggtaggagtttacacccccacggtggaagccagaactgcccaa
tccaccccctccgccccaccccaagaggtcgaatgtgtaagcaccagctccaccaccatc
cgggtaagttgggtgccaccgcccgcccagagccgcaatgggctcatcacccagtactcc
attgcctaccaggcagtggaaggagatgacaacaccaagcatgtggtggatggcattgga
cgggagcactccagctgggagatcaaggacctggagaaatggacagagtacaaggtgtgg
gtaagggctcacaccgatgtggggccgggaccggagagcatccccgtgcacgtgcgcact
gacgaggatgtgcccagcgccccgccgcgaaaggtggaggtggagtctgtgaactcgacc
gccatccgggtgagctggaagctgcccatctccaacaagcagcacgggcagatccgcggc
tatcaggttacctacgtgaagctggaaaacaacgagccccgagggcagccagtgatcaag
gacgtcatgctgtcagaagcacagtggagagctgaggactccgtcgaccatgagacagtc
attggaggcctgctgccagaaaccacctactccgtcacagttgctgcctacaccaccaaa
ggagatggtgcccgcagcaagcccaaagtcatcaccaccacaggggcagtcccggggaag
cccaccatgatgattagcacgacagccatgaacacagccctcatccagtggcacccaccc
aaggagatggtaggggagctgctgggttaccggctgcagtacagacgtctggatgaggaa
aaaatgaacacaatagacttcgggaagagagaccatcactacacagtgaccaacctgcac
aagggggccacgtacctcttcaagctgtctgccaagaacagagctggcccaggagaggag
tttgagaaggagatcacaactgccgaagatgtgccgagcggcttcccgcagaacctgcgt
gtggtgggtctcaccacatccaccacagaagttgcctgggaccccccggtcttggcagaa
aggaacggcaagatcgtcaactacacagtggtatacagggacataaatagccagcaggac
ctggctaacatcaccaaggacacgagtatcactttgacaaatttgaaacctgataccact
tacgacatcaaagtgagggcccgcaccaataagggggctgggccactcagccccagcatc
cagtcccggaccatgcctgtagagcaagtgtttgctaagaacttccgtgtcaatgccgtc
atgaaaacatctgtgttgctgagctgggaagtgcctgactcctataaatctgcagtgcct
tttaagattctctacaatagccagagtgtggaggtggatggccactcgatgaagaagctc
ataagtgacctccagccagacacagactattcctttgtgctaatgaaccgtgggagcagt
gcaggggggctccagcacctcgtctcaatccgcactgctcctgatgtcctgcaaagcaaa
cccatcgccacaaacaagtacatacaggaaggaaaattcacactaactcttcccaaagtg
cagaccactgtgccagttcggtggtactacatcgtggttgtgccagcagaccagagcacc
agcaccctgactgctcggtggcggacgcctgatgagatggagctggaccagctgctggag
gccatcagccaggggagccagagcaggcggcagcggcgccaggcagacagactgaagccc
tacattgctgctcaagtggatgtgctgcctgagaccttcaccctgggggatgagaagaac
tacaaaggtttctacaacaagcctctgtcccaggacctgagctatcgctgcttcgtgctg
gcctcgctggaggatggggacacgaagagatatgcagccagcccctactcggatgagatc
gtgatggaagtggcatcagcgaagcagcaggatgagccagagatgctgtgggtgatggga
cccgtcctggctgtgatattgatcatcatcattgtcattgccatccttctcttcaaaagg
aaaagggcacattccccctcttccaaggatgagcactccatcggcctgaaggactcactc
ttggcccactcatctgacccagttgagatgaggcggctcaactaccagactccaggtgcc
agtgtcccctgttgcccgaatatctcaagcatgcgtgaccacccccccatccccgtgagc
gacctggctgacaacatcgagcgcctcaaggccaacgatgggctgaagttctcccaggag
tacgagtccattgatcctgggcagcagttcacctgggagaactccaacctggaagtgaat
aaaccgaaaaaccgctatgcaaatgtgatcgcctatgaccactcgcgtgtcatcctgact
tccatcgatggggtcccaggcagtgattacatcaatgccaattacatcgatggctatcgg
aagcagaacgcctacatcgccacacagggaccgctgccagaaaccctcagcgacttctgg
aggatggtgtgggaacagagaacagcaactatagtcatgatgaccaggctggaggagaag
tccagggtaaagtgtgaccagtactggccgagccggggcacagaaacctatgggatgatc
caggtggtcctgctggatacagtggagctggcgacctacaccgtgcgcaccttcgcgctg
tacaagaatggctccaatgagaagacagagctgcggcagttccagttcatggcttggccc
gaccacggggtgccagaataccccaccccaatcctcgctttcctgcggcgggtcaaggcc
tgcaacccaacagatgctgggcccatggttgtccactgcagtgctggcgtaggccgaacc
ggctgcttcattgtcatcgatgccatgctggagcggatgaagcacgagaagaccgtggac
atctacgggcacgtgacgtgcatgcgctcccagcgcaactacatggtgcagacagaggac
cagtacatcttcatccacgaggccttgctggaggccgccacgtgcggcaacaccgaggtg
cccgcgcgcaacctcttcgcccacatccagaagctgacccaggtgccaccaggcgagagc
gtcactgaaatggagctggaattcaagctgctggccaattctaaagcacatacctcacgt
ttcatcagtgccaacctcccttgcaacaaattcaagaaccgcctcgtgaacatcatgccg
tatgagctgacaagagtctgcctgcagcccatccgcggcgtcgagggctctgactacatc
aatgccagcttcatagatggctacaggcagcagaaggcctacattgccacacagggacca
ctggccgagaccacagaggatttctggcggatgctctgggagcacgactccaccatcgtg
gtgatgttgacaaagctgcgtgagatgggccgggagaagtgccatcagtactggcctgca
gagcgctctgcccggtaccagtactttgtggtggaccccatggcagagtacaacatgcca
cagtacatcctccgggagttcaaggtgacggatgccagggatggccagtcacggaccatc
cgccagttccagttcacagactggcctgaacagggagtgccaaagacaggagagggcttc
atcgacttcattgggcaggtgcacaagaccaaggagcagtttgggcaggatgggcccatc
acagtgcactgcagtgccggggttgggcgcacgggcgtgttcatcacactcagcattgtg
ctggagaggatgcgctacgagggcgtggtggacatgttccagatggtgaagaccttgcgg
acgcagcggccggccatggtgcagacagaggaccagtaccagctgtgctacagagccgca
ctggagtaccttggcagcttcgaccactatgcaacgtaa
DBGET
integrated database retrieval system
