Zonotrichia leucophrys gambelii (white-crowned sparrow): 135456711
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Entry
135456711 CDS
T09958
Symbol
AGRN
Name
(RefSeq) agrin isoform X1
KO
K06254
agrin
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04512
ECM-receptor interaction
zle04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135456711 (AGRN)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
135456711 (AGRN)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
zle00535
]
135456711 (AGRN)
Proteoglycans [BR:
zle00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
135456711 (AGRN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_G_2
Kazal_2
Kazal_1
NtA
EGF_laminin
Kazal_CFAI
EGF
SEA
Laminin_G_3
hEGF
EGF_CA
Motif
Other DBs
NCBI-GeneID:
135456711
NCBI-ProteinID:
XP_064586827
LinkDB
All DBs
Position
21:complement(257638..327032)
Genome browser
AA seq
2078 aa
AA seq
DB search
MGTRLARALLALLALLAPLALPARASCPERELERREEEANVVLTGTVEEIMNVDPVHHTY
SCKVRVWRYLKGKDIVTHEILLDGGNKVVIGGFGDPLICDNQVATGDTRIFFVNPAPQAL
WPAHRNELMLNSSLMRITLRNLEEVEHCVEEHRKLLADKPNSYFTQTPPPPRDGCRGMLC
GFGAVCERSPSEPGQASCVCRKGPCAPVVAPVCGSDHSTYSNECELDRAQCNQQRRIKVV
SKGPCGSKDPCAEVTCSFGSTCVPSPDGQGAKCVCPSSCSGVPESPVCGSDGRDYRSQCH
LNKHACDKQENVFKKFDGPCDPCQAVPSEPGRVCRVNPRTRRAELLPRPEGCPPGRDPVC
GDDGVTYESECAMARSGAIRGMDIQKVRSGQCQPQDQCPEPCRLGAVCLNRRGAARCSCE
RIACDGAFRPLCARDGRTYGSDCQRRRAECLQQQHIPTRHSGPCDLGAPSPCLSVECSFG
ATCVVKNQEAVCECQQQCQGRYDPVCGTDQRSYGSACELQAMACLLQRDIGVRHKGPCEP
CGKCQFGAICEAETGRCVCPTECVPSAQPVCGTDGNTYGSECELHVRACTQQKDILVAAQ
GPCKSCGSSVCSFGSRCVAGQCLCPRCQRQPPAPVCGTDGVTYGSPCQLQEASCQLQRSI
EVARMGPCEDECGSGGSGSGDGSDCEQERCRHFGGWWDEDAEDEPCVCDFTCVAVPRSPV
CGSDGVTYANECELKKTRCEKRQELFVTSQGACRALATTPPPLLVVHCSQSVYGCCPDNV
TLALGVGAAGCPSTCQCNPYGSYGGSCDPGTGQCSCKPGVGGLKCDRCEPGFWNFRGIVT
DGRSGCTPCHCDPVGSVRDDCEQMSGLCSCRTGITGMKCTQCPDGSSLGTAGCHKDPSAP
RSCEELSCDFGASCVELNGFAHCECPSPLCPEANTTKVCGSDGVTYGDQCQLRTIACRQG
QHITVKHVGQCHESITHTISPVSPTPLPTVPPELPAPPRATPQPPLPTGAATSPSPPPAR
PTERGHPTTRRVTTARPATTTAWVTHGVHKATVRPLATVPVVAATSQPGYGESGSAEGSG
DQDMGTSGDQEASGAGSAGEEEPDEGQVTATPAIERATCYNSALGCCSDGKTAAADAEGT
NCPATKVFQGVLILEEVEGQELFYTPEMADPKSELFGETARSIESALDELFRGSDVRKDF
RSIRVRDLGQSSAVRVIVEAHFDPATSYTAADVQGALLKQLRAAKRKTILVKRPQQEHIK
FMDFDWIPRLFTTTVTTTTATTMAPGTTRRVPAATAALGQHGEPAGSPGPVGTTRSPVGT
TRSPGSGSRRGKPTQLPPGTPLARPCESQPCLHGGTCQDDGHRFTCSCPPGTGGDLCEKA
PSGSMPSFGGSSVLAFRTMRAYHTVRISMEFRALEPRGLLLYNAQRHGKDFISLALLGGF
VELRFDTGSGTGTVTSRVPVEPGRWHRLLVTRNRRTGTLAVDGEPPVSGHSPPGTDGLNL
DTELFIGGVPHEHMALVAERTGVTSGLRGCVRALAINNRGHELHPGSADVLYATAVGQCG
TDPCQPSPCHHGGTCHAREADMFHCQCPEAYTGPTCAFERNPCEPSPCHASATCLVLPAG
GALCACPMGREGDLCERVTEQDQSVPFLPEFNGFSYLELNGLQSFVPDLQDKMSMEVVFL
AKKPSGMIFYNGQKTDGKGDFVSLALHEGHLEYRYDLGKGPALLRSREPVPLDTWVSVLL
ERSGRKGVLRVNNGQRVTGESPKSRKVPHMVLNLKEPFYVGGAPDFSKLARAAAISSGFE
GAVQKITVGGVPVLKEENIRSAREVSPFRGHPCTQKPNPCQHGGTCSPSLGSYQCSCHRG
FSGAHCEKVIIEKAAGDAEAVAFDGRTYLEYHNSITKSHLSNEIPAPEALDFPSEPSEKA
LQSNHFELSIKTEATQGLLLWSGKGLERSDYIALAIVDGHVQLSYDLGSKAVTLRSSVPV
NTNQWVHIRASRVQREGSLQVGNEAPIAGSSPLGATQLDTDGALWLGGLDKLSVPQRLPK
AFSTGFVGCMRDVLVDRRELHLLEDALNQPRILHCSAK
NT seq
6237 nt
NT seq
+upstream
nt +downstream
nt
atggggacgcggctggcacgggcgctgctggcgctgctggcgctgctggcaccgctggcg
ctgcccgcccgggccagctgccccgagcgggagctggagcgccgcgaggaggaggccaac
gtggtgctgacgggcacggtggaggagatcatgaacgtggacccggtgcaccacacctac
tcgtgcaaggtgcgggtctggcgctacctgaagggcaaggacatcgtcacccacgagatc
ctgctggacgggggcaacaaggtggtgatcgggggcttcggggaccccctgatctgtgac
aaccaggtggccacgggggacacgcgcatcttcttcgtcaaccccgcgccgcaggcgctg
tggccggcgcaccgcaacgagctcatgctcaactccagcctgatgcgcatcaccctgcgc
aacctggaggaggtggagcactgcgtggaagaacataggaagcttctggccgacaaaccc
aacagttacttcacgcagacgccgccgccaccacgggatgggtgccgggggatgctctgc
gggttcggggccgtgtgcgagcgcagcccctcggagccaggccaggcctcgtgcgtgtgc
aggaagggtccctgtgcccccgtggtggccccggtgtgcggctccgaccactccacctac
agcaacgagtgcgagctggacagggcccagtgcaaccagcagaggaggatcaaggtggtc
agcaagggaccctgcggctccaaggacccctgtgccgaggtgacgtgcagctttggcagc
acgtgtgtcccctcccctgacggccagggcgccaagtgcgtgtgcccctcgtcgtgcagc
ggcgtccccgagagccccgtgtgcggcagcgacggccgcgactaccgcagccagtgccac
ctcaacaagcacgcctgcgacaagcaggagaacgtcttcaagaagttcgatggcccctgt
gacccgtgccaggccgtgccgagcgagccgggccgcgtgtgccgcgtgaacccgcggacg
cggcgggcggagctgctgccccggcccgagggctgccccccgggcagggaccccgtgtgc
ggcgacgacggcgtcacctacgagagcgagtgcgccatggcccgctcgggcgccatccgc
ggcatggacatccagaaggtgcgctcggggcagtgccagccgcaggaccagtgcccggag
ccgtgccggctgggcgccgtgtgcctgaaccggcgcggggccgcgcgctgctcctgcgag
cgcatcgcctgcgacggcgccttccggcccctgtgcgcgcgcgacggccgcacctacggc
agcgactgccagcggcgccgcgccgagtgcctgcagcagcagcacatccccacgcgccac
agcgggccctgcgacctgggcgctcccagcccctgcctgagcgtggagtgctccttcggg
gccacgtgcgtggtgaagaaccaggaggccgtgtgcgagtgccagcagcagtgccagggc
cgctacgaccccgtgtgcggcaccgaccagcgcagctacggcagcgcctgcgagctgcag
gccatggcctgcctgctgcagagggacatcggcgtcaggcacaaggggccctgcgagccc
tgcgggaagtgccagttcggtgccatctgcgaggcggagacggggcgctgcgtgtgcccc
accgagtgcgtgccctcggcgcagcccgtgtgcggcaccgacggcaacacctacggcagc
gagtgcgagctgcacgtcagggcctgcacccagcagaaggacatcctggtggctgcccag
ggcccctgcaagtcgtgtggcagctccgtgtgctccttcggcagccgctgcgtggccggg
cagtgcctgtgcccgcgctgccagcgccagcccccggcgcccgtctgcggcaccgacggc
gtcacctacggcagcccctgccagctgcaggaggcctcgtgccagctgcagaggagcatc
gaggtggccaggatgggaccctgcgaggacgagtgtggctcggggggctcgggctcgggg
gatggcagtgactgtgagcaggagcgctgccgccacttcgggggctggtgggacgaggac
gccgaggacgagccctgcgtctgtgacttcacctgcgtggccgtgccccgcagcccggtg
tgtggctctgacggcgtcacctacgctaacgagtgcgagctgaagaagacgcggtgcgag
aagcgccaggagctctttgtcaccagccagggagcctgccgggccctggccaccaccccg
ccacccctgctggtcgtgcactgcagccagagcgtctacggctgctgccccgacaacgtc
accctggcgctgggcgtgggagctgctggatgtcccagcacgtgccagtgcaacccctac
ggctcctacggcggctcctgtgacccgggcacggggcagtgctcctgcaagcccggcgtg
ggcggcctcaagtgcgaccgctgcgagcccggcttctggaacttccgcggcatcgtcacc
gacgggcggagcggctgcaccccgtgccactgtgaccccgtgggctcggtgcgggatgac
tgcgagcagatgtcggggctgtgctcctgcaggacgggcatcacgggcatgaagtgcacg
cagtgccccgacggcagcagcctgggcaccgccggctgccacaaggacccctcagccccc
aggtcgtgcgaggagctgagctgtgacttcggggcctcgtgcgtggagctcaacggcttc
gcccactgcgagtgcccgtccccactgtgccccgaggccaacaccaccaaggtgtgtggc
tctgatggtgtcacctacggggaccagtgccagctgcggaccatcgcctgcaggcagggc
cagcacatcacggtcaagcacgtggggcagtgccacgagtccatcacccacacgatctcc
ccggtgtcccccacgccgctgcccacggtgcccccggagctgcccgcgccccctcgagcc
accccacagccccccctgcccaccggggcggccaccagcccatcaccgccgccagccagg
cccacggagcgaggccaccccaccaccaggcgtgtgacaacggccaggccggccaccacc
acggcctgggtcacccacggcgtgcacaaggccaccgtccgcccgctggccaccgtgccc
gtggtggcggccaccagccagcccggctacggcgagtccggcagcgccgagggcagcggg
gaccaggacatgggcaccagcggggaccaggaggccagcggggcaggatctgctggtgag
gaggagcctgacgagggccaggtgacagccacgcctgccatcgagagggccacgtgctac
aacagcgccctgggctgctgctccgacggcaaaaccgcagccgccgatgccgagggcacc
aactgccccgccaccaaggtgttccagggagtgctgatcctggaggaggtggagggccag
gagctgttctacaccccggagatggccgaccccaaatccgagctcttcggggagacggcg
cgcagcatcgagagcgcgctggacgagctgttccggggttctgatgtcaggaaggatttc
aggagcatccgagtgcgggacctgggccagagcagcgccgtcagggtcatcgtggaggcc
cactttgacccagccacgtcctacacggccgccgatgtgcagggggccctgctgaagcag
ctccgggctgccaagaggaaaaccatcctggtgaagaggccccagcaggagcacatcaaa
ttcatggattttgactggatcccccggctcttcaccaccacggtcaccaccaccacggcc
accaccatggcccctggcaccacacgcagggtgcccgcggccaccgcggccctggggcag
cacggggagcccgcgggcagccccggccccgtgggcaccacccgcagccccgtgggcacc
acccgcagccctggcagcggcagcaggagggggaagcccacccagctgccccctggcacc
cccctggcacggccctgcgagtcccagccctgcctgcacggtggcacctgccaggacgac
gggcaccgcttcacctgcagctgccccccgggcacaggaggggatctctgtgagaaagcc
ccgagcgggtccatgcccagtttcgggggcagctcggtgctggcgttccgcaccatgcgc
gcgtaccacaccgtcaggatctccatggagttccgcgcgctcgagccccgcgggctgctg
ctctacaacgcccagcgccacggcaaggacttcatctccctggcgctgctcggcggcttc
gtggagctcaggtttgacacgggctctggcacgggcacagtcaccagccgggtgccggtg
gagccggggcgctggcaccggctgctggtgacgcggaaccggcgcacgggcacgctggcc
gtggacggggagcccccggtgagcgggcacagccccccgggcaccgacgggctcaacctg
gacaccgagctcttcatcgggggagtgccccacgagcacatggcgctggtggcggagcgc
acgggtgtcaccagcggcctgcggggctgcgtgcgggccctggccatcaacaaccgcggg
cacgagctgcacccgggctctgccgacgtgctgtacgccacggccgtgggccagtgtggc
actgacccctgccagcccagcccctgccaccacggcggcacctgccatgccagggaggcc
gacatgttccactgccagtgccccgaggcctacacgggccccacgtgtgccttcgagagg
aacccgtgcgagccctctccgtgccacgcctctgccacctgcctggtgctgcccgccggg
ggggccctgtgcgcctgccccatgggccgtgagggggacctgtgcgagcgagtgacagag
caggaccagtccgtgcccttcctgcccgagttcaacggcttctcctacctggagctcaac
gggctgcagagcttcgtgcccgacctgcaggacaagatgtccatggaggtggtgttcctg
gccaagaagcccagcgggatgatcttctacaacggccagaagaccgatggcaagggggac
tttgtgtccctggcactgcacgagggacacctggagtacagatacgacctgggcaaaggg
ccagccctgctcaggagcagggagcccgtgcccctggacacgtgggtcagtgtcctgctg
gagaggagcggccgcaagggcgtcctgagggtcaacaacggccagagggtcacaggggag
tccccgaaatcccgtaaggtgcctcacatggtgctgaacctgaaggagcccttctacgtg
gggggagcccccgacttctccaagctggctcgagcagctgccatctccagcggcttcgag
ggagctgtgcagaagatcaccgtgggaggcgtgcccgtgctgaaggaggagaacatccgc
agtgccagggaggtgtccccgttccgggggcacccctgcacccagaaacccaacccgtgc
cagcacgggggcacctgcagccccagcctgggcagctaccagtgctcctgccacaggggc
ttctcgggggcacactgcgagaaagtgatcatcgagaaggcagcaggggacgccgaggcc
gtggccttcgatggccgcacgtacctggagtaccacaacagcatcactaagagccacctg
agcaatgagatcccagctcccgaggcgctggatttcccctcggagcccagtgagaaggcc
ctgcagtccaaccactttgagctgagcatcaagacggaggcgacgcaggggctgctgctg
tggagcgggaaggggctggagcgctcggactacatcgccctggccatcgtggacgggcac
gtgcagctcagctacgacctgggctccaaggccgtcaccctgcgctccagcgtgcccgtc
aacaccaaccagtgggtgcacatccgggcctccagggtgcagagggaaggctccctgcag
gttgggaacgaggcccccatcgccggctcctctcccctcggggccacccagctggacacg
gacggggcgctgtggctgggtgggctggacaagctgagcgtgccccagcgcctgcccaag
gccttcagcacgggtttcgtgggctgcatgcgggacgtgctcgtggaccggcgggagctg
cacctgctggaggacgccctgaaccagccccggatattgcactgctcggccaaatag
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