Zonotrichia leucophrys gambelii (white-crowned sparrow): 135458376
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Entry
135458376 CDS
T09958
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135458376 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zle03041
]
135458376 (EFTUD2)
Spliceosome [BR:
zle03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
135458376 (EFTUD2)
Complex C
U5 SnRNP specific factors
135458376 (EFTUD2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
Motif
Other DBs
NCBI-GeneID:
135458376
NCBI-ProteinID:
XP_064589563
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All DBs
Position
27:1746762..1773853
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGREAKDLEELEDDDDDDDMGEHDEEHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgacctgtacgatgagtttggcaattacatcgggcccgagctggactcggac
gatgacgacgacgagctgggccgggaggccaaagatctggaagagctggaggatgatgat
gatgatgatgacatgggagaacatgatgaggagcaccctggcatggaggtggtgctgcat
gaggacaagaagtactaccccacagcagaggaggtctatgggcctgaggtggagaccatc
gtgcaggaggaggacacacagccactcactgagcccatcatcaaacctgtgaaaaccaag
aagttctccctgatggagcagacactgccagtcactgtctatgagatggatttcctggca
gatctgatggacaactcggagctgatccggaatgtgactctgtgtgggcacctgcaccac
ggcaagacgtgttttgttgactgcctgatagagcagacgcaccccgagatccggaaacgc
gacgatcaggatctctgctacactgatatattgttcacagagcaggagaggggagtgggg
atcaagagcaccccagtgacaattgttctgccagacaccaaaggaaaatctttcctcttc
aacatcattgacactccaggtcatgtgaacttctcagacgaggtgaccgccggccttcgc
atctcggacggcgtcgtgctcttcatcgacgcggccgagggggtgatgctgaacacagag
aggctgatcaagcatgcggtgcaggagaggctggcagtgactgtgtgcatcaacaagatt
gacagactcatcctggagctcaaactgccccccacagacgcttactacaagctcagacac
attgtggatgaagttaatggtctgatcagcatgtattccaccgatgagaacctcgtgctg
tctccccttctggggaatgtgtgcttctccagctctcagtacagcatctgcttcacactg
gggtcttttgcaaagatttatgcagacacatatggagacatcaattaccaggagtttgcc
aagcggctttggggcgacatctacttcaacccgaagacgcgcaaattcaccaagaaggcc
ccgacgagcagctcccagcgcagcttcgtggagttcattctggagcccctgtacaagatc
ttggctcaggtggtgggggatgtggacacaaccctgcccaggactctggatgagcttggc
atccacctgaccaaggaggagctgaaactgaacatccggcccctcctgcgcctcgtctgc
aagaaattctttggggagttcacaggttttgtggacatgtgtgtgcagcacattccctcc
ccaaaagtgggggccaagaccaaaatcgagcacacctacaccggcggcgtcgactccgac
ctgggcgaggccatgagcgagtgtgaccctgatggtcccttgatgtgtcacaccaccaag
atgtacagcactgatgatggtgtgcagttccacgcctttggcagggtgctcagtggcacc
atccatgctgggcagcctgtgaaggtccttggggagaattacaccctggaggatgaggag
gattcccagatctgcaccgttggacgcctctggatctcagttgcaaggtatcacattgag
gtgaacagagttcctgctggcaactgggtgctgattgagggcgtggaccagcccatagtg
aagacagcaactgtgacagagcctcggggcaatgaggaggctcagatctttcgtcccttg
aagttcaacaccacatctgtgatcaaaatagctgtggagccagtgaacccctcagagctg
cccaaaatgttggatggtcttcgtaaagtcaacaagagctacccctcacttacaaccaag
gtggaagaatctggggagcatgtgatcctgggcacaggagagctgtacctggactgtgtg
atgcacgacctgaggaagatgtactctgagattgacatcaaggtggctgatccagtggtg
acattctgtgagacagtggtggaaacatcctccctgaagtgctttgctgagacacccaac
aagaagaacaagatcacaatgattgctgagcccctggagaagggactggcagaggacatt
gagaatgaagtggtgcagataacatggaacagaaagaagctgggtgaattcttccagacc
aaatacgactgggatttgctggctgcccgttccatctgggcctttgggcctgatgccact
ggcccaaacatcctggtagatgacacactgccctcagaggtggacaagtctctgctgggt
tcagtgaaggacagcatcgtgcagggcttccagtgggggaccagggaagggcctctctgt
gatgaattgatccgcaacgtgaagttcaagatcctggacgcagtgattgctcaggagccc
ttgcacaggggtggagggcagatcatccccacggcccgcagggtggtgtactctgccttc
ctcatggccacccctcgtctgatggagccctactactttgtggaggtgcaggctcctgct
gactgtgtgtctgctgtgtacaccgtgctggcccggcgcagaggccacgtcacccaggat
gctccaatcccaggctctcccctgtacaccatcaaagccttcatcccagccattgattcc
tttggctttgagacagacttgaggacccacacacagggccaagccttctccctgtctgtc
ttccaccactggcagatcgtgcctggggatcccttggacaagagcatcgtcatcaggccg
ctggagccgcagccagccccacacctggccagggagttcatgatcaagaccaggcgtagg
aagggcctcagtgaggatgtgagcatcagcaagttctttgatgaccccatgttgctggag
ctggccaagcaggacgtcgttctcaactaccccatgtaa
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