Zonotrichia leucophrys gambelii (white-crowned sparrow): 135458534
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Entry
135458534 CDS
T09958
Symbol
BRCA1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03440
Homologous recombination
zle03460
Fanconi anemia pathway
zle04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
135458534 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
135458534 (BRCA1)
03460 Fanconi anemia pathway
135458534 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zle01009
]
135458534 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zle04121
]
135458534 (BRCA1)
03036 Chromosome and associated proteins [BR:
zle03036
]
135458534 (BRCA1)
03400 DNA repair and recombination proteins [BR:
zle03400
]
135458534 (BRCA1)
Enzymes [BR:
zle01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
135458534 (BRCA1)
Protein phosphatases and associated proteins [BR:
zle01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
135458534 (BRCA1)
Ubiquitin system [BR:
zle04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
135458534 (BRCA1)
Multi subunit type E3
BRCC complex
135458534 (BRCA1)
Chromosome and associated proteins [BR:
zle03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
135458534 (BRCA1)
DNA repair and recombination proteins [BR:
zle03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
135458534 (BRCA1)
BRCA1-A complex
135458534 (BRCA1)
BRCA1-B complex
135458534 (BRCA1)
BRCA1-C complex
135458534 (BRCA1)
BRCA complex
135458534 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
135458534 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_assoc
zf-C3HC4
BRCT
zf-C3HC4_4
zf-C3HC4_2
zf-RING_UBOX
RING_XB3-XBAT31
zf-RING_2
zf-RING_6
zf-C3HC4_3
zf-Nse
zf-RING_5
Zf_2nd_IFT121
zf-MIZ
Motif
Other DBs
NCBI-GeneID:
135458534
NCBI-ProteinID:
XP_064589791
LinkDB
All DBs
Position
27:2864854..2887953
Genome browser
AA seq
1781 aa
AA seq
DB search
MDFPVITIGQVQNVLAAMQKNLECPICLDVVQEPVSTKCDHIFCRFCMFKLISKKKKGVV
ECPLCKTEVTKRSLKANSRFKQLIEGLLETIHAFELDTGVKFLKSHHFPKTSTEATAAES
LCKESSVIQSKGFRNRRKSAKGNGQENFPLEASVNIQLTDAKMCHPRSKTQKSGSQKGNI
EFGSESSEEFFKQATKTGFEGKGAVQISSQARLEELGSAEKGNENSCNAQPDKLGAKEIT
LPGITGEGDFSKECLSKKSTQNITECAKPDQVNVTGCQNSPLGVLAVELLPEQCDRAGGA
SPTLNGDTEEMEEQQSQHSSDHQESDLEGGSENRLDKSRGMDTDAQSVEAAEGYEPENDS
SQDRELPQAEPLHSAPLNKVSKKRLKQSIQKVNEWFSKSNEILSSGSSVDESAASADGSG
EGDLCLSDKESCISGRTDPMADSMGAAAVEGKKRWSKQTAEDIKDKIFGRTYKRGRKSNP
PSTLRDILPAGQKEDVAAAQGLKGFSKDRLKRKRKSACLQPEDFIKKKDTEKGDGGPQSV
NGGLGEAEEKSCDESVAVNGSHLSQNRANNTSTEPEEGGESTWKKAAEKVPAQHCDGEPE
MYNCDQKSTRKRSSAAKRCRHSSRTMCALQLVVDRDSAFPDPAEPQIDSYPSSAEPSEAE
PEQNPLRRSRRLQLLSEEMAKETRKRVKKSKKRNGSDRGRSGSGEQRNVAAPSAECRELS
EPQGELSSRPVSRLEGGDLQANEVQVNLKNLSDTAGAGKSLFSPSCLPSNCGSTVPDTGS
QGSRVLGSPLLLQVPSVSAGQTASPQAEGTESPPASPPQRGHDSQNAPGHFKAEKLPMAK
NVLELSKEAEDSDLDTQYLRNIFRHSKRSSFSLFQTRALADPPSENFSLSRAAQGENKAS
KQLQPESLQGERTDQNLSRVSEKDEEKEKLKSCESARVDPVPCFAVSRDDVSQAAEEGTL
TPAGAGTAQAEHKNGFLQEEQGSEKPVSGETGTESGLGQNPIESDGSQSDQSNTEGHESS
QNDLHTGQANSFSSESNQAAKTEVVDCTEPILHFQSTSTISPAACQQSPAELSCEVTRTK
SSRRGRKCVNGNEEEAAQTVSTAAEALQEPLGENCGLTGLSETPDALLCSDPDIEESPSL
CDTDRKEQSAVFVRSDSAELQSRNANSKPTPRGPRKPRRRVQKLPSSDEESCEDEELPCF
RTLIFSKSASTPLQADQQMAPGVEPAVAECPGSPSVGKDGNALQKVPEASLGRVCASPSQ
ESECSVNLFSSQSNMSEESLNGAQELNKHLPQAQVSKQMSSVNESKETSGGGLKETKDES
QEDPDMGANLGEGCGSDSEMSIVEDSCGAFSEGEILTTQQKNAMQKSLKKLQQEMAALEA
VLKQNGSQSWEVLPVQRELPHPSPEGASEMEQTRPEKTRSPELLLSASKSSFRKSSDLGK
GPECDSAVQNKTPSEKTKPVQEHRQCQLEAENAEEQNSGTGQNSASVSSDLFGNVTQSSD
NSSSSAMLFIPQTAEATAGPVVAQSTGKSSGPGHKFKKSEFFPVPVLHNSTGKENATNPV
RTKRKEMSIVVSGLNHSEHLVVQKFVKKTQSTLSNHITAGTTHVIMKTDEELVCERTLKY
FLGIAGGKWVLGYQWIIQSFKAGKVLDEENFEVRGDVINGRNHQGPKRARQALTAKIFKD
FEICCCGPFTDMTTAGVDGGAVRCLCGEAAWPVHRHGKFYCSCGCAARCLGGKHRLWSNP
AAEQRCPGNSGVGPGQRGLLPVPGAERLPRVLRVNSSSEQS
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atggacttcccagtgattactattggacaagtacaaaatgtgcttgcggcgatgcagaag
aacttggagtgcccaatatgcctggatgtggtgcaagagcctgtttcaacaaaatgtgat
cacatattctgcagattctgcatgttcaaactgatcagcaaaaagaagaaaggtgtggtg
gagtgtcctctgtgtaagactgaagttaccaagagaagtctgaaagcaaattccagattt
aagcaactcattgaaggactgttggaaactatccatgcttttgagcttgacactggagtg
aagtttttaaagagtcatcactttcctaaaacatccacggaagccactgctgctgagtcc
ctgtgtaaagaaagttctgtcatccaaagcaagggcttcagaaacaggaggaaaagtgct
aaaggaaatggacaagaaaacttccccttggaagccagtgtgaatattcagcttacagat
gccaaaatgtgtcacccaagaagcaaaacccagaaatctggttctcaaaagggtaatata
gagtttggctctgaatcatctgaagagttttttaaacaggcaaccaaaactgggtttgaa
ggcaaaggagcagttcagatttcttctcaagcaaggctggaagaacttgggagtgctgag
aaagggaatgaaaattcttgtaatgcccagcctgacaagctgggtgccaaagaaataaca
ctgccaggtatcacaggtgaaggggatttctcaaaggaatgtttgagcaagaagagcact
cagaacatcacagaatgtgccaaacctgaccaagtgaatgtgactggatgccaaaattct
cctttgggtgttcttgctgtggagctgctcccagagcagtgtgacagagcagggggtgcc
agtcccaccctgaatggggacacagaggaaatggaggagcagcagagccagcacagcagt
gaccaccaagagtcagatttagaaggtggctcagagaacaggctggataaaagcagggga
atggacactgatgcacagagtgtggaagctgcagagggatatgagcctgagaatgactct
tcccaggacagagaacttcctcaggcagagccccttcactctgcccccctgaacaaagtc
tccaagaagagactgaagcagagcattcagaaagtcaacgaatggttttccaaaagcaat
gagattttgtcttctggttcttcagtggatgaatcagctgcatcagctgatggctcaggg
gaaggagatctgtgtttgtcagataaagagtcctgtatttcaggaaggactgaccctatg
gcagattccatgggagctgcagcagtggaaggaaaaaagaggtggtcaaaacaaacagca
gaagacattaaagacaaaatatttggcagaacatacaagagagggaggaaatcaaatccc
ccttctaccctgagagacattttgcctgctggacaaaaggaagatgtggctgctgctcag
ggcctgaagggtttcagcaaagacagactcaaacgaaagaggaagagtgcctgcctgcaa
cctgaggatttcatcaagaaaaaagatacagaaaagggagatgggggccctcaaagtgtt
aatgggggccttggagaggctgaagagaaaagctgtgatgaaagtgttgctgttaatggg
agtcacctctctcagaatagagcaaataatacatcaacagagcctgaggagggaggagag
tccacatggaagaaagctgctgagaaggtccctgcccagcactgtgatggggagccagag
atgtataactgtgatcagaaaagcaccagaaagagaagttctgcagcaaaaaggtgcagg
cattccagcagaaccatgtgtgctctgcagctggtggtggacagagactctgctttccct
gacccagctgagccccagatcgacagctaccccagcagtgcagagcccagcgaagctgag
cccgagcaaaacccgctgagacgcagcaggaggctccagctgctctctgaagaaatggca
aaagaaacaagaaaaagagtaaagaagagtaaaaagagaaatggcagtgatcgtgggagg
tctggctctggagagcagaggaatgtggcagctccctctgctgagtgcagagagctgagt
gagcctcagggtgagctgagttccaggccagtctcccgtttggagggaggagatctgcaa
gcaaatgaggtgcaggttaatctaaagaatttatctgacactgcaggagctgggaagagt
ctgttcagtccttcatgtctgccttcaaactgtggttccactgtgcctgatacaggttct
caaggcagcagagtacttggtagccccctcctcctgcaagttccttcagtgtctgctggg
caaacggcttctccccaggctgaggggactgagtcacctcctgcttctcccccacagcgt
ggccatgattcacaaaatgctccagggcatttcaaagctgaaaagttgccaatggctaaa
aatgttttggaattgagtaaggaagctgaagacagtgacctggacacacaatatctgagg
aacatattcaggcactccaagcgctcctccttcagcctttttcagactcgtgccctggca
gatcctccttctgaaaacttcagtctatcacgtgctgctcagggagaaaataaagctagc
aaacaattacagccagaaagcttgcaaggggagagaactgatcaaaacttgagcagggtt
tctgagaaagatgaagagaaagagaagcttaagagctgtgagtctgcacgtgtggatcct
gtgccttgctttgctgtcagcagggatgatgtttcacaggctgcagaggaagggactctg
acaccagcaggagcagggactgctcaggctgagcacaaaaatggattcctgcaagaggag
cagggcagtgaaaagccagtgtcaggtgagacagggacagaaagtggtttgggacaaaat
cccattgaaagtgatggaagccagagtgaccagagtaacacagaggggcatgagtccagc
cagaatgatttacacacaggccaggcaaacagcttcagttcagaaagcaatcaggcagca
aagactgaagtggttgattgcacagaaccaattctacattttcaatccacatcaacgatt
tctcctgcagcttgtcagcaaagccctgctgaactcagctgtgaagtcacgaggacaaaa
agtagcagaagaggaagaaaatgtgtaaatgggaatgaagaagaagcagcccaaactgtt
agcacagctgcagaggctctgcaagaacctcttggggagaattgtggccttacaggtttg
tctgaaacccctgatgccctgctgtgctctgaccctgacattgaggagagccccagcctg
tgtgacactgacaggaaggagcaatctgcagtgtttgtgagaagtgacagtgcagagctg
cagagcagaaatgcaaattccaaaccaacacctcgaggtcctcgaaagcctcgaaggcga
gtgcagaaattgccatcttcagatgaagagtcctgtgaggatgaggagttgccctgcttc
aggacactgatcttcagcaaatcagcaagcacccctttgcaggctgatcaacaaatggca
cctggggtggagcctgcagtggcagagtgtccaggcagccccagtgtgggtaaggatggc
aatgctctgcagaaagtgccagaagcttccctaggtcgtgtgtgtgcttcaccaagccag
gaatcagaatgctctgtcaacttattttcttcccagtccaacatgtctgaggagtcactg
aatggagcacaagagctgaacaaacatttgccacaagctcaggtgtccaaacaaatgagc
agtgtaaatgagagtaaagaaacttctggtggagggctgaaggaaaccaaagatgaaagc
caagaagatccagacatgggagcaaacctaggtgaaggctgtggatctgacagtgaaatg
agtattgtggaggattcctgtggagctttctctgagggtgaaatcctcaccacacagcaa
aagaatgcaatgcagaaaagcctgaaaaaacttcagcaagaaatggctgcgcttgaagct
gtgctaaagcagaatgggagccagagctgggaagttttacctgtccagagggagctgcca
catcccagtcctgaaggagcatctgaaatggagcaaacaagaccagaaaaaaccaggtcc
ccagaattgctgctttcagcttctaaatcctctttcaggaagagctcagatctggggaaa
ggccctgagtgtgacagtgcagtgcagaacaaaactccctctgagaaaacaaaacctgtg
caggagcacaggcagtgccagctggaagcagaaaatgcagaggagcagaattctgggact
ggacaaaacagtgcatcagtgtcatcagatctgtttgggaatgtgacccagagttcagat
aattcctcctcctctgcaatgctttttatccctcaaactgcagaagccacagctgggcct
gttgtggctcagagcactggaaaaagctctggcccaggacacaaatttaaaaaaagtgaa
ttttttcctgtacctgttctgcacaattcaactgggaaagaaaatgctacaaatccagtg
aggaccaagaggaaagaaatgtcaattgtggtctcaggtctgaatcacagtgagcatttg
gtggtccagaagtttgtgaagaaaactcagagcactttatccaatcacattactgcagga
acaacccatgtcatcatgaaaacagatgaggagctggtgtgtgaacggaccctgaagtat
ttcctgggcattgcaggagggaagtgggtgcttggttaccagtggataattcagtctttt
aaagctggaaaagtactggatgaggagaactttgaagtcagaggagatgtcatcaatggg
aggaaccatcaaggtcccaagagggccagacaggccctgactgccaagatctttaaagac
tttgagatctgttgctgtggccccttcactgacatgactacagctggagtggatggtgga
gctgtgcggtgcctctgtggtgaagcagcctggccagttcacaggcacggcaagttctac
tgcagttgtggttgtgcagccagatgcttgggaggaaaacacagattatggagcaatcca
gcagcagagcagcgttgccctggtaactcgggagtgggtcctggacagcgtggcttgcta
ccagtgccaggagctgagcgcttacctcgtgtcctgagggtgaacagcagctctgaacaa
tcctaa
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integrated database retrieval system
