Zea mays (maize): 103641862
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Entry
103641862 CDS
T01088
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X2
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
zma
Zea mays (maize)
Pathway
zma04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
103641862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
103641862
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
103641862
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
103641862
NCBI-ProteinID:
XP_008663395
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Position
10:134663206..134668797
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AA seq
822 aa
AA seq
DB search
MGIPSFYKWVVSKYPSIISPVKDEPEECPDGIIYDNLYLDMNCIIHCCFHPQDQLTHADI
DVRPPTTANEVFESMFEYMDRLFRIVRPTSLLYLAVDGVAPFAKMNRIRRGRFHSAMERL
AEEPPREISEVSDPNVISPGTEFMEKVSEALEYYIRARFNSDPWWRDIMVDVADKFNISV
LKVILSDASVPGEGEHKIMSFIRAQCSMEGYDPNTRHCLFGHDADLIMLALASHEVYFSI
LREDVLYQNQEETEGNPKKSFLFLNMWVLREYLEIEFKILDPVCETDIERLIDDFIFICF
LMGNDFIPHIPSLKTQEGAVDLLIEVYKTTFNKMGGYITNTDKVKDKYGAYLEVSRLETF
FHELSMYEDKIFLKRYDLKQDSLLETYHEMLREAPESERPELRQKLDDLLFNEENPYDSI
RLGLPGWKSRFFREHFGAKTSSEIGKLQNDMAQKYLEGLCWVLQCYFADVPSWSWYYPFY
VAPFVSDLKGLSRIEISFTVDKPLRPFDQLMAVLPMQSWGALPKCYEKKRDTPFYYPRLV
HAKDGKYFLWRGISEELRLSASEMVDRKLTTLESRRNTTRKEKVFLHRSSNSVPHNGGSS
SLPHNEVTEQASHCSMQKLPIDSATSGIGGWIAPAYNDGFCDGFFPSPTPNLQDITSDQT
ISGMFFNPEAANPVPRLLGNVRVPDKTVTGADISKRPLWHTYPGSRPPRIVQRPDTVWKP
STPASPREEHKNAGTGWIGRGRGNALAAAAAAETQWKSSSYSYRRGGGFQRAAMAQSRGS
SSSFDGGGAYSFRPLGSAPWTAGDGSRSGGAGHGGIVQPRGW
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgggaataccatctttctacaaatgggtcgtcagcaagtacccaagcatcatctcccct
gtgaaggacgaaccagaggagtgccctgatggcatcatctacgacaacctctacctcgac
atgaattgcatcatccattgctgcttccacccacaggaccagctaacgcatgcagacata
gatgtgcgccctccgacgacggccaatgaggtgttcgagtccatgttcgagtacatggac
cgcttgttccgcatcgtcaggccaacaagtctgctgtacttggcagtagacggcgttgct
ccttttgccaaaatgaaccgaatacgaaggggacgtttccactccgccatggaaagactt
gctgaggaaccaccgcgagagatttccgaagtttctgaccccaatgtcatcagcccaggt
actgagttcatggagaaggtatcagaagccctcgagtactacatccgtgccagatttaac
agtgacccctggtggagagacatcatggtggatgttgctgacaagtttaacatatctgtt
ctgaaggtaatactctctgatgcgagtgttcctggagaaggagagcacaagatcatgtct
ttcatccgtgcgcaatgcagcatggaaggctatgatcccaacactcgacactgcttgttt
gggcatgatgcggatctgataatgcttgctttggcatctcacgaagtctacttctctatt
ctgcgtgaggatgtgctctaccaaaatcaggaagaaacggaagggaatccgaagaaatca
tttctgtttttgaacatgtgggttctgagagagtacttggagattgaattcaagatactg
gacccagtctgcgagactgatattgagaggctaatagatgacttcatctttatttgtttc
cttatgggaaacgatttcatcccacatattccgtcacttaagacgcaagagggtgcggtt
gatcttctcatcgaagtgtacaaaacaaccttcaacaaaatgggagggtatattaccaac
acagacaaagtcaaagataagtatggtgcatatctggaagtctcaaggctggaaacattt
tttcatgaactctccatgtatgaagataaaattttcctcaaaagatatgatctgaaacag
gattcgttgctggagacatatcatgaaatgttgcgtgaagctccagaaagcgaaagacca
gaactgagacaaaaattagatgatctcctttttaatgaagaaaacccatatgacagtata
agactaggcttaccaggatggaagtctcggttcttcagggagcatttcggtgccaaaact
tctagtgaaattgggaagctgcagaacgacatggcgcaaaagtacttagaaggactttgt
tgggtgcttcaatgctatttcgcagacgttccatcatggagctggtactacccgttctat
gttgctcctttcgtatctgatctcaaaggtctatctaggatcgagatatctttcactgtg
gacaaaccattacgaccattcgatcagcttatggcagttttaccgatgcaaagctggggt
gctctcccaaaatgttacgagaaaaaaagggacacccctttttactacccgaggttggtg
catgccaaggatgggaaatatttcttgtggaggggcatctctgaggaactgcggctttcg
gccagcgaaatggtagatagaaagctcacgacccttgaatcgagacggaataccactagg
aaagagaaggtgtttctgcacaggagctcgaactctgtgccacacaatggaggctcaagc
tctctgccacacaacgaggttactgaacaagcatcgcactgttcgatgcagaagcttccg
atagattcagctacgagtggaattggagggtggatagcgcctgcttacaatgatggcttc
tgcgacggtttcttcccctcacccacaccaaacctgcaggacataacgagtgatcagaca
atatcaggtatgttcttcaaccctgaggcggcgaacccagttccaagactgcttggcaat
gtcagagttcctgacaagactgttacgggagctgacatctccaagaggccactctggcac
acgtacccgggatcaaggccgccgcgcatcgttcagaggccggacaccgtgtggaagccg
agcacgccggcgtcgccgcgggaagagcacaagaacgccggcacgggctggatcgggcgg
gggagagggaacgcccttgccgccgccgccgccgccgagacgcaatggaagagcagcagc
tacagctacaggagagggggtggtttccagcgggcggccatggcacaaagccgaggaagc
agcagcagcttcgacggcggcggtgcgtacagtttccggccgcttggaagtgcgccgtgg
accgccggggacggcagccgaagcggaggcgccggccatggcgggattgtgcagccacgt
ggttggtag
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