Zymomonas mobilis subsp. mobilis ATCC 10988: Zmob_0906
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Entry
Zmob_0906 CDS
T01875
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
zmm
Zymomonas mobilis subsp. mobilis ATCC 10988
Pathway
zmm03030
DNA replication
zmm03410
Base excision repair
zmm03420
Nucleotide excision repair
zmm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zmm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Zmob_0906
03410 Base excision repair
Zmob_0906
03420 Nucleotide excision repair
Zmob_0906
03430 Mismatch repair
Zmob_0906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zmm03032
]
Zmob_0906
03400 DNA repair and recombination proteins [BR:
zmm03400
]
Zmob_0906
Enzymes [BR:
zmm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Zmob_0906
DNA replication proteins [BR:
zmm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Zmob_0906
DNA repair and recombination proteins [BR:
zmm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Zmob_0906
NER (nucleotide excision repair)
GGR (global genome repair) factors
Zmob_0906
MMR (mismatch excision repair)
DNA ligase
Zmob_0906
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Zmob_0906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AEH62741
UniProt:
A0A0H3FYH9
LinkDB
All DBs
Position
1070643..1072838
Genome browser
AA seq
731 aa
AA seq
DB search
MNADIDLFSYLNPEKQDLSALAPKDLSREQAVIELERLANLISHYDHLYHDKDNPAVPDS
EYDALVLRNRRIEQFFPDLIRPDSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVED
FLGRVRRFFNLKENQAVICTVEPKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRV
IDDIPKTLKGDNWPEIIEIRGEVYMAKSDFAALNARQTEENKKLFANPRNAAAGSLRQLD
PNITARRSLRFLAHGWGEATSLPADTQYGMMKMIESYGLSVSNLLARADNIGQMLDFYQK
IEAERADLDFDIDGVVYKLDQLDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVG
RTGVLTPVAKLEPVTVGGVVVSSATLHNSDEIERLGARPGDRVLVQRAGDVIPQIVENLT
SDVDRPIWHFPHRCPVCDSVARREEGEVAWRCTGGLICPAQRVERLCHFVSRTAFEIEGL
GKSHIESFFADKLIETPADIFRLFQKRQLLIEREGWGELSVDNLISAIDKRRKVPFDRFL
FALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEKYQKRVDKELI
SFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFELASSPLSGKIIVFTGS
LQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDISIIDEDRWHRI
VENDGQDSIKI
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcggatattgaccttttttcttatctgaatcctgaaaaacaggatttgtcagct
ctggctccgaaagatttatctcgtgaacaagcggttattgaattggaacgcttggcaaat
ttgatcagccattacgatcatctttatcatgataaggataatccggctgttcctgatagc
gaatatgatgccttggtcttgcgaaaccgtcggattgaacagttttttcctgacttaatc
cggccggattctccaagtaaaaaagtcggtagtcgtcctaattcacgtttgcccaaaatt
gcacatcgggcagcgatgcttagtcttgataatggttttctggatcaggatgttgaagat
tttttgggtcgggtccgccgttttttcaatttaaaagaaaatcaggccgtcatttgcact
gttgaaccgaaaattgacggtctctcttgctcgttgcgttatgaaaagggcattttaact
caggccgttacgcgaggagacggggttattggtgaggatgttacgcctaatgtccgcgtt
attgatgacatccccaaaacattaaaaggcgataattggccagaaattattgaaattcgt
ggcgaagtttacatggcaaaaagcgattttgctgctttgaatgctcgtcagacagaagaa
aataaaaagctttttgccaatcctcgcaatgctgcggctgggtctttgcggcagctagac
ccgaatattaccgcaagacgttctcttcgctttttggcgcatggttggggcgaggctaca
tctctacctgccgatacccaatacggcatgatgaaaatgatagaaagctatggcttgtct
gtcagtaatctgctggctcgtgctgacaatattgggcagatgctcgatttctatcagaaa
atagaggccgaacgggctgatttagattttgatattgatggtgtcgtttataaattagat
cagcttgattggcagcaaagatttggattttcagcgcgcgccccacgttttgccttggcg
cataaattcccagcagaaaaagcgcaaacaacgcttttagatatcgagatacaggtcggg
cgtacgggtgttttgacacccgtggctaaattagagcctgtaacggttggaggggtcgtt
gtctcttctgcgaccctccataactctgatgaaattgagcgtttgggtgcccgtcctgga
gatcgggttctggttcaacgtgctggagatgttattccccagatagtcgaaaatctaacc
tctgatgtcgatcgtccgatttggcatttcccgcatcgctgtccagtttgtgactctgtt
gctagaagggaagaaggggaagtcgcctggcgttgcaccggaggtttgatctgtccagcg
caacgcgttgagcgcttgtgccatttcgtttcgcgcactgcctttgaaattgagggctta
ggaaaaagccatatcgaaagtttttttgccgataaattgattgaaacacctgccgatatt
tttcggttgtttcaaaaacgtcagcttttgatcgagagggaaggttggggtgaactttct
gtcgataatttaatatcggctatcgacaaacggcgaaaagtcccgtttgatcgttttctt
tttgccttgggtattcgccatgtaggtgctgtaacagcgcgagatttagctaaatcttat
caaacatgggataattttaaagcggccattgatgaggcggctcatctacggactatatta
cagccttcaagtgaagagtctgaagaaaagtatcaaaaaagggtagataaagagcttatc
tcttttttccatattcctaatatgggtggtaaaatcattcgaagccttctggattttttt
gctgaaacccataattccgatgttgtttctgatcttttacaggaagttcaaattgagcct
ctttattttgagctggcctcttcgcctttgtcaggaaagattattgtttttactggaagt
ctgcaaaaaataacgagagacgaggctaagcgacaagctgaaaatctgggcgctaaagtg
gcttcatccgtttcaaaaaagactaatcttgttgtcgcgggagaggccgcaggttctaag
ctttcaaaagcgaaagagctggatatttccattatagatgaggatagatggcatcgtatc
gtagaaaatgacgggcaagacagtataaaaatctaa
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