Zymomonas mobilis subsp. mobilis ZM4: ZMO0364
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Entry
ZMO0364 CDS
T00221
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
zmo
Zymomonas mobilis subsp. mobilis ZM4
Pathway
zmo03030
DNA replication
zmo03410
Base excision repair
zmo03420
Nucleotide excision repair
zmo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ZMO0364
03410 Base excision repair
ZMO0364
03420 Nucleotide excision repair
ZMO0364
03430 Mismatch repair
ZMO0364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zmo03032
]
ZMO0364
03400 DNA repair and recombination proteins [BR:
zmo03400
]
ZMO0364
Enzymes [BR:
zmo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ZMO0364
DNA replication proteins [BR:
zmo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ZMO0364
DNA repair and recombination proteins [BR:
zmo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ZMO0364
NER (nucleotide excision repair)
GGR (global genome repair) factors
ZMO0364
MMR (mismatch excision repair)
DNA ligase
ZMO0364
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ZMO0364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AAV88988
UniProt:
P28719
LinkDB
All DBs
Position
366113..368308
Genome browser
AA seq
731 aa
AA seq
DB search
MNADIDLFSYLNPEKQDLSALAPKDLSREQAVIELERLAKLISHYDHLYHDKDNPAVPDS
EYDALVLRNRRIEQFFPDLIRPDSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVED
FLGRVRRFFNLKENQAVICTVEPKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRV
IDDIPKTLKGDNWPEIIEIRGEVYMAKSDFAALNARQTEENKKLFANPRNAAAGSLRQLD
PNITARRSLRFLAHGWGEATSLPADTQYGMMKVIESYGLSVSNLLARADDIGQMLDFYQK
IEAERADLDFDIDGVVYKLDQLDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVG
RTGVLTPVAKLEPVTVGGVVVSSATLHNSDEIERLGVRPGDRVLVQRAGDVIPQIVENLT
PDVDRPIWRFPHRCPVCDSVARREEGEVAWRCTGGLICPAQRVERLCHFVSRTAFEIEGL
GKSHIESFFADKLIETPADIFRLFQKRQLLIEREGWGELSVDNLISAIDKRRKVPFDRFL
FALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEKYQKRVDKELI
SFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFELASSPLSGKIIVFTGS
LQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDISIIDEDRWHRI
VENDGQDSIKI
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcggatattgaccttttttcttatctgaatcctgaaaaacaggatttgtcagct
ctggctccgaaagatttatctcgtgaacaagcggttattgaattagaacgcttggcaaag
ttgatcagccattacgatcatctttatcatgataaggataatccggctgttcctgatagc
gaatatgatgccttggtcttgcgaaaccgtcgtattgaacagttttttcctgacttaatc
cggccggattctccaagtaaaaaagtcggtagtcgtcctaattcacgtttgcccaaaatt
gcacatcgggcagcgatgcttagtcttgataatggttttctggatcaggatgttgaagat
tttttgggtcgggtccgccgttttttcaatttaaaagaaaatcaggctgtcatttgcact
gttgaaccgaaaattgacggtctctcttgctctttgcgttatgaaaagggcattttaact
caggccgttacgcgaggagacggggttattggtgaggatgttacgcctaatgtccgcgtt
attgatgacatccccaaaacattaaaaggcgataattggccagaaattattgaaattcgt
ggcgaagtttacatggcaaaaagcgattttgctgctttgaatgctcgtcagacagaagaa
aataaaaagctttttgccaatcctcgcaatgctgcggctgggtctttgcggcagctagac
ccgaatattaccgcaagacgttctcttcgctttttggcgcatggttggggcgaggctacc
tctctacctgccgatacccaatacggcatgatgaaagtgatagaaagctatggcttgtct
gtcagtaatctgctggctcgcgctgacgatattgggcagatgctcgatttctatcagaaa
atagaggccgaacgggctgatttagattttgatattgatggtgtcgtttataaattagat
caactggattggcagcaaagatttggattttcagcacgtgccccacgttttgccttggcg
cataaattcccagcagaaaaagcacaaacgacgcttttagatatcgagatacaggttggg
cgtacgggcgttttgacacctgtggctaaattagagcctgtaacggttggaggggtcgtt
gtctcttctgcgaccctccataactctgatgaaattgagcgtttgggtgtccgtccggga
gatcgggttctggttcaacgtgctggagatgttattccccagatagtcgaaaatctaacc
cctgatgtcgatcgtccgatttggcgtttcccgcatcgctgtccagtttgtgactctgtt
gctagaagggaagaaggggaagtcgcctggcgttgcaccggaggtttgatctgtccagcg
caacgcgttgagcgcttgtgccatttcgtttcgcgcactgcctttgaaattgagggttta
ggtaaaagccatatcgaaagtttttttgccgataaattgattgaaacacctgccgatatt
tttcggttgtttcaaaaacgtcagcttttgatcgagagggaaggttggggtgaactttct
gtcgataatttaatatcggctatcgacaaacggcgaaaagtcccgtttgatcgttttctt
tttgccttgggtattcgccatgtaggtgctgtaacggcgcgggatttagctaaatcttat
caaacatgggataattttaaagcggccattgatgaggcggctcatctacggactatatta
cagccttcaagtgaagagtctgaagaaaagtatcaaaaaagggtagataaagagcttatc
tcttttttccatattcctaatatgggtggtaaaatcattcgaagccttctggattttttt
gctgaaacccataattccgatgttgtttctgatcttttacaggaagttcaaattgagcct
ctttattttgagttggcctcttcacctttgtcaggaaagattattgtttttactggaagt
ctgcaaaaaataacgagagacgaggctaagcgacaagctgaaaatctgggcgctaaagtg
gcttcatccgtttcaaaaaagactaatcttgttgtcgcgggagaggccgcaggttctaag
ctttcaaaagcgaaagagctggatatttccattatagatgaggatagatggcatcgtatc
gtagaaaatgacgggcaagacagtataaaaatctaa
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