Zymomonas mobilis subsp. pomaceae ATCC 29192: Zymop_0834
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Entry
Zymop_0834 CDS
T01556
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
zmp
Zymomonas mobilis subsp. pomaceae ATCC 29192
Pathway
zmp03030
DNA replication
zmp03410
Base excision repair
zmp03420
Nucleotide excision repair
zmp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zmp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Zymop_0834
03410 Base excision repair
Zymop_0834
03420 Nucleotide excision repair
Zymop_0834
03430 Mismatch repair
Zymop_0834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zmp03032
]
Zymop_0834
03400 DNA repair and recombination proteins [BR:
zmp03400
]
Zymop_0834
Enzymes [BR:
zmp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Zymop_0834
DNA replication proteins [BR:
zmp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Zymop_0834
DNA repair and recombination proteins [BR:
zmp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Zymop_0834
NER (nucleotide excision repair)
GGR (global genome repair) factors
Zymop_0834
MMR (mismatch excision repair)
DNA ligase
Zymop_0834
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Zymop_0834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AEI37734
UniProt:
F8ESF9
LinkDB
All DBs
Position
complement(948434..950632)
Genome browser
AA seq
732 aa
AA seq
DB search
MSEDPDLFSAISSQNQTLSTISPERLTSDQATFELERLATLIRHYDRLYHDQDSPAISDG
EYDALVLRNRLIEQNFPNLTRPDSPSKRIGTRATSRLPKIAHSIAMLSLDNGFSDKDVGD
FLDRIRRFLRLGAQEPVALTVEPKIDGLSCSLRYEKGRLTQAVTRGDGIIGEDVTPNVRV
INDIPETLAGSTWPEVVEIRGEVYMTKAAFSDLNQRQSEENGKLFANPRNAAAGSLRQLD
PNITARRSLRFLAHGWGEISDFPADTQYGMMQAIKSYGLPVSDLLLCCHSLDEMLQHYHK
IEAHRADMDFDIDGVVYKIDRLDWQSRLGFSARAPRFALAHKFPAEKAQTTLLDIDIQVG
RTGVLTPVAKLEAVTVGGVVVTSATLHNADEIKRLAVRPGDRVLIQRAGDVIPQIVENLT
PEVNREDWHFPSTCPVCHSLAKREEGESAWRCTGGLICPAQRVERLRHFVSRTAFDIEGL
GLTHIESFFADKLIVTPADIFRLHKRRDTLINREGWAEVSVNNLLAAIENRRVISLDRFL
YALGIRHIGVVTARDFARQYHEWDAFSKMIGQLKSMRNILLPSLIETEEKYRKRVAKELT
GFVNIPNIGNKIIQSLIAFFSESHNQSVVDDLLLEIEVKSVHFQQQSSPLAGEVIVFTGS
LETLSREEAKRQAETLGAKVAASVSRKTSFVVCGKAAGSKLSKAEALSIPVIDEMKWQKI
VKNNGHISVKTE
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggatcccgatcttttttccgctatatcgtctcaaaatcagacattatctact
atttcacctgaacgcttaacatcggatcaggctactttcgaattggagcgactagctaca
ttaattcgccattatgataggctttatcatgaccaagattccccggctatttctgatggg
gaatatgatgctttagtgctgcgtaatcgtcttattgaacagaatttccctaatttaacg
aggccagattcccctagtaagcgtattgggacacgcgcgacctctcgtcttcctaaaatt
gctcattctatcgctatgctgagccttgataatggtttttcagataaagatgtgggtgat
tttttagaccgcattcggcgttttcttcgcttaggtgcgcaagaaccggtagctttaacg
gttgaacctaaaattgacggcctttcctgttctctccgctatgaaaagggaaggcttacc
caagcggtaacgcgaggcgacggtatcatcggagaagatgttacgcctaatgttcgggtt
attaatgatattcctgaaactctagcgggttccacatggccggaggtcgtggagatcaga
ggcgaagtctatatgacaaaagctgccttttctgatctcaatcaacggcaatcagaagaa
aatggaaagctatttgccaatcctcgaaatgctgcggccggttctttacgacagttagat
ccgaatattaccgcgaggcggtcacttcgctttttagcccatggttggggagaaatatct
gattttcctgccgacacgcaatacggtatgatgcaggctattaaaagttatggtctgcct
gtcagtgatcttttgctgtgctgtcattcactggatgaaatgttacagcattatcataag
atagaagcccatagagccgatatggatttcgatattgatggggtggtttataaaattgat
cgacttgattggcaaagccgtcttggcttttctgcccgtgccccccgttttgctttagct
cataaattccctgcggaaaaagcgcaaacaacgctcttagatattgatatacaggtagga
cgaacgggtgttctgacccctgtcgctaaattggaagcggtgaccgtagggggggtcgtg
gttacttctgcaacgcttcataatgcagatgaaattaagcgactagctgttcgtccggga
gatcgcgtgcttattcagcgtgcgggtgatgttattccccaaattgttgaaaatttaaca
cctgaggttaatcgggaggattggcattttccttcaacttgtcctgtttgtcattcactg
gcaaaacgggaagaaggggagtccgcatggcgttgcaccggtggtttgatatgtccggct
cagcgtgtggaacgcttacgtcattttgtatcgcggacggcgtttgatattgaaggcttg
gggttaacccatattgagagtttttttgccgataaattgatagtaacacccgcagatatt
tttcgtcttcataaacgacgtgatacgttaataaatcgagagggctgggcagaagtttca
gtgaacaatttattagcggctattgaaaatcgtcgtgttatttctcttgatagattttta
tatgccttaggcattcgccatattggtgtggttacagctagagattttgctcgacagtat
catgaatgggatgccttttcaaaaatgatagggcagcttaagagtatgcgtaacatatta
ttaccatctctcattgaaactgaagaaaaatatcgaaaaagagttgccaaagaactgact
ggatttgttaatattcctaatattgggaataaaataattcagagtttgattgcttttttc
tcggaaagccacaaccaatctgtcgttgatgatctgctgctcgaaatcgaggtcaaatct
gtccattttcagcaacaatcctccccgcttgcaggagaagtcattgtctttactggaagt
ttggaaaccctgtcccgcgaagaggccaaacggcaggctgagactttgggggccaaagtt
gccgcttctgtctcgcgcaaaacaagttttgttgtctgcggaaaagcagcaggttctaaa
ctttctaaggcagaagcgctttcaattcctgttattgatgaaatgaaatggcaaaaaatt
gttaaaaacaatggtcatatatctgttaaaactgaataa
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