Zymomonas mobilis subsp. mobilis NRRL B-12526: A254_00898
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Entry
A254_00898 CDS
T03160
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
zmr
Zymomonas mobilis subsp. mobilis NRRL B-12526
Pathway
zmr03030
DNA replication
zmr03410
Base excision repair
zmr03420
Nucleotide excision repair
zmr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A254_00898 (ligA)
03410 Base excision repair
A254_00898 (ligA)
03420 Nucleotide excision repair
A254_00898 (ligA)
03430 Mismatch repair
A254_00898 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zmr03032
]
A254_00898 (ligA)
03400 DNA repair and recombination proteins [BR:
zmr03400
]
A254_00898 (ligA)
Enzymes [BR:
zmr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A254_00898 (ligA)
DNA replication proteins [BR:
zmr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A254_00898 (ligA)
DNA repair and recombination proteins [BR:
zmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A254_00898 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A254_00898 (ligA)
MMR (mismatch excision repair)
DNA ligase
A254_00898 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A254_00898 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AHJ70513
LinkDB
All DBs
Position
complement(1001941..1004136)
Genome browser
AA seq
731 aa
AA seq
DB search
MNADIDLFSYLNPEKQDLSALAPKNLSREQAVIELERLAKLISHYDHLYHDKDNPAVPDS
EYDALVLRNRRIEQFFPDLIRPDSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVED
FLGRVRRFFNLKENQAVICTVEPKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRV
IDDIPKTLKGDNWPEIIEIRGEVYMAKSDFTALNARQTEENKKLFANPRNAAAGSLRQLD
PNITARRSLRFLAHGWGEATSLPADTQYGMMKMIESYGLSVSNLLARADDIGQMLDFYQK
IEAERADLDFDIDGVVYKLDQLDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVG
RTGVLTPVAKLEPVTVGGVVVSSATLHNSDEIERLGVRPGDRVLVQRAGDVIPQIVENLT
PDVDRPIWHFPHRCPVCDSVARREEGEVAWRCTGGLICPAQRVERLCHFVSRTAFEIDGL
GKSHIESFFADKLIETPADIFRLFQKRQLLIEREGWGELSVDNLISAIDKRRKVPFDRFL
FALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEKYQKRVDKELI
SFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFELASSPLSGKIIVFTGS
LQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDISIIDEDRWHRI
VENGGQESIKI
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcggatattgaccttttttcttatctgaatcctgaaaaacaggatttgtcagct
ctggctccgaaaaatttatctcgtgaacaagcggttattgaattggaacgcttggcaaag
ttgatcagccattacgatcatctttatcatgataaggataatccggctgttcctgatagc
gaatatgatgccttggtcttgcgaaaccgtcgtattgaacagtttttccctgacttaatc
cggccggattctccaagtaaaaaagtcggtagtcgtcctaattcacgtttgcccaaaatt
gcacatcgggcagcgatgcttagtcttgataatggttttctggatcaggatgttgaagat
tttttgggtcgggtccgccgttttttcaatttaaaagaaaatcaggccgtcatttgcact
gttgaaccgaaaattgacggtctctcttgctctttgcgttatgaaaagggcattttaact
caggccgttacgcgaggagacggggttattggtgaggatgttacgcctaatgtccgcgtt
attgatgacatccccaaaacattaaaaggcgataattggccagaaattattgaaattcgt
ggcgaagtttacatggcaaaaagcgattttactgctttgaatgctcgtcagacagaagaa
aataaaaagctttttgccaatcctcgcaatgctgcagctgggtctttgcggcagctagac
ccgaatattaccgcaagacgttctcttcgctttttggcgcatggttggggcgaggctacc
tctctacctgccgatacccaatacggcatgatgaaaatgatagaaagctatggcttgtct
gtcagtaatctgctggctcgtgctgacgatattgggcagatgctcgatttctatcagaaa
atagaggccgaacgggctgatttagattttgatattgatggtgtcgtttataaattagat
cagctcgattggcagcaaagatttggattttcagcgcgcgccccacgttttgccttggcg
cataaattcccagcagaaaaagcacaaacgacgcttttagatatcgagatacaggttggg
cgtacgggcgttttgacacctgtggctaaactagagcctgtcacggttggaggggtcgtt
gtctcttctgcgaccctccataactctgatgaaattgagcgtttgggtgtccgtccggga
gatcgggttctggttcaacgtgctggagatgttattccccagatagtcgaaaatttaacc
cctgatgtcgatcgtccgatttggcatttcccgcatcgctgtccagtttgtgactctgtt
gctagaagggaagaaggggaagtcgcctggcgttgcaccggaggtttgatctgtccagcg
caacgcgttgagcgcttgtgccatttcgtttcgcgcactgcctttgaaattgatggctta
ggtaaaagccatatcgaaagtttttttgccgataaattgattgaaacacctgccgatatt
tttcggttgtttcaaaaacgtcagcttttgatcgagagggaaggttggggtgaactttct
gtcgataatttaatatcggctatcgacaaacggcgaaaagtcccgtttgatcgttttctt
tttgccttgggtattcgccatgtaggtgctgtaacggcgcgagatttagctaaatcttat
caaacatgggataattttaaagcggccattgatgaggcagctcatctacggactatatta
cagccttcaagtgaagagtctgaagaaaagtatcaaaaaagggtagataaagagcttatc
tcttttttccatattcctaatatgggtggtaaaatcattcgaagccttctggattttttt
gctgaaacccataattccgatgttgtttctgatcttttacaggaagttcaaattgaacct
ctttattttgagttggcctcttcgcctttgtcaggaaagattattgtttttactggaagc
ctgcaaaaaataacgagagacgaggctaagcgacaagctgaaaatctgggcgctaaagtg
gcttcatccgtttcaaaaaagactaaccttgttgtcgcgggagaggccgcaggttctaag
ctttcaaaagcgaaagagctggatatttccattatagatgaggatagatggcatcgtatc
gtagaaaatggcgggcaagagagtataaaaatctaa
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