Zobellella sp. DQSA1: ACEVBK_15435
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Entry
ACEVBK_15435 CDS
T11130
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
zob Zobellella sp. DQSA1
Pathway
zob03030
DNA replication
zob03410
Base excision repair
zob03420
Nucleotide excision repair
zob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACEVBK_15435 (ligA)
03410 Base excision repair
ACEVBK_15435 (ligA)
03420 Nucleotide excision repair
ACEVBK_15435 (ligA)
03430 Mismatch repair
ACEVBK_15435 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zob03032
]
ACEVBK_15435 (ligA)
03400 DNA repair and recombination proteins [BR:
zob03400
]
ACEVBK_15435 (ligA)
Enzymes [BR:
zob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACEVBK_15435 (ligA)
DNA replication proteins [BR:
zob03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACEVBK_15435 (ligA)
DNA repair and recombination proteins [BR:
zob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACEVBK_15435 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACEVBK_15435 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACEVBK_15435 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACEVBK_15435 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XGY37233
LinkDB
All DBs
Position
complement(3221572..3223614)
Genome browser
AA seq
680 aa
AA seq
DB search
MSDAKARILALREQLDSYNYQYYVEDAPTVPDAEYDRLMRELVALEQAHPELMDADSPSQ
KVGGVPVSAFPEVRHALPMLSLDNVFSDEELAAFEKRVMDRLGVADPLDFCCEPKLDGLA
VSLVYEQGRLVQAATRGDGTTGEGITENVRTIRAVPLKLKGEGWPARLEVRGEVYMPRAG
FENMNQAARAEGGKVFANPRNAAAGSLRQLDSRITAKRPLAFYCYGVGLVEGEALAERHF
DILQQLKQWGLPVCPEIKRVQGKAGCQAFHDDILARRESLPYEIDGVVYKVDALALQQRL
GFVARAPRWATAHKFPAQEELTRLLKVEFQVGRTGAITPVAKLEPVPVAGVVVSNATLHN
ADEIARLGVMVGDTVIVRRAGDVIPQVVGVLLERRPGDAQSITFPDHCPVCGAEIERIEG
EAVARCTGGLFCAAQRKEAIRHFASRKALDIEGLGTKLVEQLVDQEKVKTPADLFHLDHA
TLAGLERMGEKSATNLLAALDKARHTTLSRFLYALGIREVGEATASNLAQHFRALEAVMQ
AEVETLLAVPDVGEVVAKHIYYFFRQPHNQDVVQALVAPRAQGGCGLNWPVIEAVPVAAQ
PLAGQTFVLTGTLGQLSRNDAKAALQALGAKVAGSVSAKTSWVVAGEAAGSKLAKAQELG
VPVMDEEALLVLLAEHGWQR
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgccaaagcccgaatccttgccctgcgcgagcaactcgatagctacaactac
cagtactatgtggaagatgcccccacggtgcctgacgcggagtacgacaggctgatgcgg
gaactggtggcgttggagcaagcccatcccgaactgatggacgcggactcccccagccag
aaggtgggcggcgtgccggtatccgcctttcccgaggtgcgtcacgccctgccgatgctg
tcgctcgacaacgtgtttagcgacgaagagctggcggccttcgagaagcgggtgatggac
cggctgggtgtggccgacccgctcgacttttgctgtgagcccaagctcgacggcctggcg
gtcagcctggtgtacgagcagggacggctggtgcaggccgccacccgcggtgacggcacc
accggcgagggcattaccgaaaatgtgcgcaccattcgcgccgtgccgctgaagctgaaa
ggcgagggctggccggcccgtctcgaggtgcgtggcgaggtttacatgcccagggccggt
ttcgagaacatgaaccaggcggcgcgggccgagggcggcaaggttttcgccaacccgcgc
aatgccgccgccggcagcctgcggcagctcgactcccgtattaccgccaagcggccgctg
gccttttactgctacggggtcggcttggtggaaggcgaggcgctggcggagcgtcacttc
gacatcctgcagcaattgaaacagtgggggctgccggtctgtcccgagatcaagcgggtg
cagggcaaggccggttgccaggccttccatgacgatatcctggcgcgtcgggagtcattg
ccttatgaaatcgacggtgtggtatacaaggtcgatgcactggccctgcagcagcggctg
gggtttgtggcccgggcgccgcgctgggccaccgcccacaagtttccggcccaggaagaa
ctgacccggctgctgaaggtggaattccaggtcggccgtaccggtgccatcaccccggtg
gccaagctggagccggtgccggtggccggggtggtggtatccaacgccaccctgcataac
gccgatgagatagcccgcctgggggtgatggtaggcgacaccgtgatcgtgcgtcgagcc
ggggatgtgatcccgcaggtggtgggggtgctgctggaacggcgtccgggggatgcgcaa
agcattacctttcccgaccattgtccggtctgcggtgccgaaatcgaacgaatcgaaggc
gaagcggtggcccgctgtaccggcggcctgttttgtgcggcccagcgcaaggaagccatc
cgtcatttcgcatcccgcaaggcattggatatcgagggactgggcaccaaactggtcgag
caactggtggatcaggaaaaggtcaagaccccggcagacttgtttcacctggaccatgcc
actttggccggcctggagcggatgggcgagaagtccgcgaccaatctgctggcggcgctg
gacaaggcacgtcacaccaccttgtcgcgcttcctgtacgcgctgggtatccgtgaagtg
ggggaggccaccgccagcaacctggcacagcacttccgggctctggaggcggtgatgcag
gccgaagtggaaactctgctggcggtgccggatgtgggcgaggtggtggccaaacatatc
tactattttttccggcagcctcataatcaggacgtcgtgcaggcgctggtggcgccaaga
gcgcagggcggctgcggcctgaactggccggtaatcgaggccgtgccggtggcagcccag
cccctggcggggcagaccttcgtgcttaccggtactctcggccagctgtcgcgcaacgat
gccaaggcggcgttgcaagctctgggcgccaaggtggctggctcggtatcggccaagacc
agttgggtggtggccggtgaggcggcaggttccaagctggccaaggcccaggaactgggt
gtgccggtgatggatgaagaggcgctgttggtgctgctggccgagcatggctggcagcgg
tga
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