KEGG   PATHWAY: zof00195
Entry
zof00195                    Pathway                                
Name
Photosynthesis - Zingiber officinale (ginger)
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
zof00195  Photosynthesis
zof00195

Module
zof_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:zof00195]
zof_M00161  Photosystem II [PATH:zof00195]
zof_M00163  Photosystem I [PATH:zof00195]
Organism
Zingiber officinale (ginger) [GN:zof]
Gene
41826257  psbA; photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
122033857  photosystem II protein D1-like [KO:K02703] [EC:1.10.3.9]
41826191  psbB; photosystem II CP47 chlorophyll apoprotein [KO:K02704]
41826149  psbC; photosystem II CP43 chlorophyll apoprotein [KO:K02705]
41826148  psbD; photosystem II protein D2 [KO:K02706] [EC:1.10.3.9]
41826179  psbE; photosystem II cytochrome b559 alpha subunit [KO:K02707]
41826178  psbF; photosystem II cytochrome b559 beta subunit [KO:K02708]
41826194  psbH; photosystem II phosphoprotein [KO:K02709]
41826129  psbI; photosystem II protein I [KO:K02710]
41826176  psbJ; photosystem II protein J [KO:K02711]
41826128  psbK; photosystem II protein K [KO:K02712]
41826177  psbL; photosystem II protein L [KO:K02713]
41826143  psbM; photosystem II protein M [KO:K02714]
122041698  oxygen-evolving enhancer protein 1, chloroplastic [KO:K02716]
122046219  oxygen-evolving enhancer protein 1, chloroplastic [KO:K02716]
122012022  oxygen-evolving enhancer protein 1, chloroplastic [KO:K02716]
122015812  oxygen-evolving enhancer protein 1, chloroplastic-like [KO:K02716]
121988587  oxygen-evolving enhancer protein 2, chloroplastic-like [KO:K02717]
121975039  psbP-like protein 1, chloroplastic [KO:K02717]
121969937  psbP-like protein 1, chloroplastic [KO:K02717]
122038723  oxygen-evolving enhancer protein 2, chloroplastic-like [KO:K02717]
122027554  oxygen-evolving enhancer protein 3, chloroplastic-like [KO:K08901]
122007858  photosynthetic NDH subunit of lumenal location 2, chloroplastic-like [KO:K08901]
122030332  oxygen-evolving enhancer protein 3-2, chloroplastic-like [KO:K08901]
122011338  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
122012050  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
121968528  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
122012157  photosynthetic NDH subunit of lumenal location 2, chloroplastic-like [KO:K08901]
122015193  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
122054074  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
122016824  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
121974423  photosystem II 10 kDa polypeptide, chloroplastic-like [KO:K03541]
121968649  photosystem II 10 kDa polypeptide, chloroplastic-like [KO:K03541]
121969306  photosystem II 10 kDa polypeptide, chloroplastic-like [KO:K03541]
122054203  photosystem II 10 kDa polypeptide, chloroplastic-like [KO:K03541]
121974389  photosystem II 22 kDa protein, chloroplastic-like [KO:K03542]
121969274  photosystem II 22 kDa protein 1, chloroplastic-like [KO:K03542]
41826192  psbT; photosystem II protein T [KO:K02718]
121987603  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
122003769  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
121983022  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
122000178  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
122032581  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
122034498  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
122020413  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
122013900  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
41826151  psbZ; photosystem II reaction center Z protein [KO:K02724]
122056092  photosystem II repair protein PSB27-H1, chloroplastic-like [KO:K08902]
122051565  photosystem II repair protein PSB27-H1, chloroplastic-like [KO:K08902]
121987729  photosystem II reaction center PSB28 protein, chloroplastic-like [KO:K08903]
122003930  photosystem II reaction center PSB28 protein, chloroplastic-like [KO:K08903]
121979924  photosystem II reaction center PSB28 protein, chloroplastic-like [KO:K08903]
122000378  photosystem II reaction center PSB28 protein, chloroplastic-like [KO:K08903]
41826156  psaA; photosystem I P700 apoprotein A1 [KO:K02689] [EC:1.97.1.12]
122034195  photosystem I P700 chlorophyll a apoprotein A1-like [KO:K02689] [EC:1.97.1.12]
122016162  photosystem I P700 chlorophyll a apoprotein A1 [KO:K02689] [EC:1.97.1.12]
41826155  psaB; photosystem I P700 apoprotein A2 [KO:K02690] [EC:1.97.1.12]
122016163  photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
41826230  psaC; photosystem I subunit VII [KO:K02691] [EC:1.97.1.12]
122041914  photosystem I reaction center subunit II, chloroplastic-like [KO:K02692]
122046439  photosystem I reaction center subunit II, chloroplastic-like [KO:K02692]
121992860  photosystem I reaction center subunit IV, chloroplastic-like [KO:K02693]
121996837  photosystem I reaction center subunit IV, chloroplastic-like [KO:K02693]
122023829  photosystem I reaction center subunit IV, chloroplastic-like [KO:K02693]
122042040  photosystem I reaction center subunit III, chloroplastic-like [KO:K02694]
122027477  photosystem I reaction center subunit III, chloroplastic-like [KO:K02694]
122029571  photosystem I reaction center subunit III, chloroplastic-like [KO:K02694]
122046557  photosystem I reaction center subunit III, chloroplastic-like [KO:K02694]
122008095  photosystem I reaction center subunit V, chloroplastic-like [KO:K08905]
122016997  photosystem I reaction center subunit V, chloroplastic-like [KO:K08905]
121978842  photosystem I reaction center subunit VI, chloroplastic-like [KO:K02695]
122011388  photosystem I reaction center subunit VI, chloroplastic-like [KO:K02695]
122014415  photosystem I reaction center subunit VI, chloroplastic-like [KO:K02695]
122037819  photosystem I reaction center subunit VI, chloroplastic-like [KO:K02695]
41826172  psaI; photosystem I subunit VIII [KO:K02696]
41826184  psaJ; photosystem I subunit IX [KO:K02697]
121975683  photosystem I reaction center subunit psaK, chloroplastic-like [KO:K02698]
122006318  photosystem I reaction center subunit psaK, chloroplastic-like isoform X1 [KO:K02698]
122002062  photosystem I reaction center subunit psaK, chloroplastic-like isoform X1 [KO:K02698]
121973563  photosystem I reaction center subunit psaK, chloroplastic-like [KO:K02698]
122041632  photosystem I reaction center subunit XI, chloroplastic-like [KO:K02699]
122046158  photosystem I reaction center subunit XI, chloroplastic-like [KO:K02699]
122053611  photosystem I reaction center subunit XI, chloroplastic-like [KO:K02699]
122055990  photosystem I reaction center subunit XI, chloroplastic-like [KO:K02699]
122006043  photosystem I reaction center subunit N, chloroplastic-like [KO:K02701]
121972353  photosystem I reaction center subunit N, chloroplastic-like [KO:K02701]
121976003  photosystem I subunit O-like [KO:K14332]
121971653  photosystem I subunit O-like [KO:K14332]
41826175  petA; cytochrome f [KO:K02634]
122033399  cytochrome f [KO:K02634]
41826195  petB; cytochrome b6 [KO:K02635]
122008513  cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like isoform X1 [KO:K02636] [EC:7.1.1.6]
122014962  cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like isoform X1 [KO:K02636] [EC:7.1.1.6]
41826196  petD; cytochrome b6/f complex subunit IV [KO:K02637]
41826181  petG; cytochrome b6/f complex subunit V [KO:K02640]
41826142  petN; cytochrome b6/f complex subunit VIII [KO:K03689]
122011357  plastocyanin-like [KO:K02638]
122011528  plastocyanin-like [KO:K02638]
122015291  plastocyanin-like [KO:K02638]
122015654  plastocyanin-like [KO:K02638]
121974405  ferredoxin, root R-B2-like [KO:K02639]
122003314  ferredoxin C 1, chloroplastic-like [KO:K02639]
122026110  ferredoxin-like [KO:K02639]
122028555  ferredoxin-like [KO:K02639]
122007338  ferredoxin, root R-B2-like [KO:K02639]
122032133  ferredoxin-A-like [KO:K02639]
121967581  ferredoxin C 2, chloroplastic-like [KO:K02639]
122034553  ferredoxin-A-like [KO:K02639]
121969290  ferredoxin, root R-B2-like [KO:K02639]
122035745  ferredoxin, root R-B2-like [KO:K02639]
122052821  ferredoxin C 2, chloroplastic-like [KO:K02639]
121999810  ferredoxin-3, chloroplastic-like [KO:K02639]
122053100  ferredoxin, root R-B2-like [KO:K02639]
122056016  ferredoxin C 1, chloroplastic-like [KO:K02639]
122025641  ferredoxin--NADP reductase, leaf isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
122005800  ferredoxin--NADP reductase, embryo isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
121992177  ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
121996123  ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
121980977  ferredoxin--NADP reductase, embryo isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
121984867  ferredoxin--NADP reductase, embryo isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
122001506  ferredoxin--NADP reductase, embryo isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
122055835  ferredoxin--NADP reductase, embryo isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
122024515  ferredoxin--NADP reductase, embryo isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
122030906  cytochrome c6, chloroplastic-like isoform X1 [KO:K08906]
122033605  cytochrome c6, chloroplastic-like [KO:K08906]
41826168  atpE; ATP synthase CF1 epsilon subunit [KO:K02114]
41826169  atpB; ATP synthase CF1 beta subunit [KO:K02112] [EC:7.1.2.2 7.2.2.1]
122033397  ATP synthase subunit beta, chloroplastic [KO:K02112] [EC:7.1.2.2 7.2.2.1]
122001765  ATP synthase subunit beta, chloroplastic-like [KO:K02112] [EC:7.1.2.2 7.2.2.1]
122025667  ATP synthase gamma chain 1, chloroplastic-like [KO:K02115]
122018474  ATP synthase gamma chain 1, chloroplastic-like [KO:K02115]
121975859  ATP synthase gamma chain 1, chloroplastic-like [KO:K02115]
122034708  ATP synthase gamma chain 1, chloroplastic-like [KO:K02115]
41826133  atpA; ATP synthase CF1 alpha subunit [KO:K02111] [EC:7.1.2.2 7.2.2.1]
121991261  ATP synthase subunit alpha, chloroplastic-like [KO:K02111] [EC:7.1.2.2 7.2.2.1]
122033678  ATP synthase subunit alpha, chloroplastic-like [KO:K02111] [EC:7.1.2.2 7.2.2.1]
122035353  ATP synthase subunit alpha, chloroplastic [KO:K02111] [EC:7.1.2.2 7.2.2.1]
122018801  ATP synthase delta chain, chloroplastic-like [KO:K02113]
122019952  ATP synthase delta chain, chloroplastic-like [KO:K02113]
121992567  ATP synthase subunit delta, chloroplastic-like [KO:K02113]
121996521  ATP synthase subunit delta, chloroplastic-like [KO:K02113]
122024399  ATP synthase delta chain, chloroplastic-like [KO:K02113]
41826134  atpF; ATP synthase CF0 subunit I [KO:K02109]
121975031  ATP synthase subunit b', chloroplastic-like [KO:K02109]
121969924  ATP synthase subunit b', chloroplastic-like [KO:K02109]
122037647  putative ATP synthase protein YMF19 [KO:K02109]
41826135  atpH; ATP synthase CF0 subunit III [KO:K02110]
41826136  atpI; ATP synthase CF0 subunit IV [KO:K02108]
122034581  ATP synthase subunit a, chloroplastic [KO:K02108]
122035051  ATP synthase subunit a, chloroplastic [KO:K02108]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
PMID:14764885
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
PMID:12518057
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
PMID:11217865
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
PMID:11418848
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
PMID:11369223
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
PMID:11914373
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
zof00196  Photosynthesis - antenna proteins
zof00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   
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