Zingiber officinale (ginger): 121976873
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Entry
121976873 CDS
T08725
Name
(RefSeq) truncated basic helix-loop-helix protein A-like isoform X1
KO
K28363
basic helix-loop-helix transcription factor family protein
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
121976873
Transcription factors [BR:
zof03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
121976873
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH-MYC_N
bHLH-TF_ACT-like_plant
HLH
bHLH_IRO3
bHLH_SAC51
Motif
Other DBs
NCBI-GeneID:
121976873
NCBI-ProteinID:
XP_042385197
LinkDB
All DBs
Position
4B:134358841..134365054
Genome browser
AA seq
667 aa
AA seq
DB search
MIIPPATAGDGAGTLQKTLQAVVQSVQWTYSLFWHLCPQQGVLVWGDGYYNGGIKTRKTV
QPVEVSTEEAALQRSQQLRELYESLSTGEANLPARRPCAALSPEDLTEAEWFYLMCISFS
FPPAVGLPGKAFAQQRYVWLTGASEVDSKVFSRAILAKSAQIQTVVCIPLVDGVLELGNV
EKVEEDAALIQHARRFFGDYLETHTKPVLSEQSTSNLLFQQPPPAIVHHQMSIDFHGQHD
EDADRDHNDANYDDDDDDDDEDDDDDDEGDEEDGDDAGSGGQGIRSISAAVVDVSDNVMA
VEGVANEVTTSELMQVEMPEEMRRVGSPSDCSNVGSQSKVQMQDDRSYRNWHFLLEDLGT
QLQDFSPEDAHYSETVSSILRHNLKRWVDVDASFRYSIHSAFLKWSHKRDHYCYSHRPQK
TSQWLVKRVLLNIRELHCKFGDAGSSPKSHKGTTTTAQEEGSANHVLAERRRREKLNERF
MILRALVPFVTKMDKASILGDTIEYVKQLRKHIQDLEAKNKQIESCWRLNRTKQQQQQSA
RKKGKLSASGNQELLDNRLSTFEKQKLPVVDPNNRVLNLTKTSEAATSVCVSVVESEVIL
ELQCSFRDGLVLRILQTLQELGLEVTSIQYSSTDGVSNVELHSQMKEVQGKRAGIDDVRK
AIHQIIV
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgatcattccccctgcgaccgccggcgacggcgccggcacgctccagaagacgcttcag
gcggtggtgcaaagcgtgcagtggacctacagcctcttctggcacctctgccctcagcaa
ggggttttggtgtggggggacgggtactacaacggggggatcaagacgcggaagacggtg
cagccggtggaggtcagcacggaggaggcagcactgcagcggagccagcagctgcgggag
ctctacgagtcgctgtcgacgggggaggccaacttaccggctcgccgcccctgcgccgcg
ctctcgccggaggacctcaccgaggccgagtggttctacctcatgtgcatctccttctcc
ttcccgccggctgtcgggctccctggaaaggcatttgcccagcaacgatacgtttggctg
accggagcgagcgaggtggacagcaaagtattttcgagggctattctggcaaagagcgct
caaattcagacagtcgtgtgcattcctctggtcgatggagtccttgaactgggcaacgtc
gaaaaggtcgaggaagatgcggcgttgatacagcacgcgaggagattcttcggcgactat
ctcgagacgcacactaagccggttctctcagagcagtccacttctaatcttctgttccaa
cagccgccgccggcgatcgtgcaccatcagatgagcattgactttcatggtcaacacgac
gaagacgctgatcgcgatcacaacgatgccaattacgacgacgacgacgacgacgacgat
gaagatgacgacgacgacgacgagggcgatgaagaggatggcgacgacgcagggtcaggt
ggtcaaggaataagatcgatcagtgccgccgtcgtcgacgtctccgataatgtaatggcc
gtggagggggtagcgaatgaagtcacgacgagcgagctgatgcaggtcgagatgccggag
gagatgcgccgggtgggctctcccagcgattgctccaacgttggatcgcaatcgaaggtc
caaatgcaggacgatcgctcgtacagaaactggcatttcctgctcgaagatctcggaact
cagctccaagatttctccccggaggacgctcactactcggagacggtctccagcatcctc
cggcacaacctgaagaggtgggtggacgtcgacgcctccttccgctactcgattcattct
gcgttcctcaaatggagccacaaaagagaccactactgctacagccatcgtccacagaag
acctcgcagtggctggtgaagcgtgttttgctgaacatccgggaactgcactgcaaattc
ggcgacgctggcagctcgccgaagtcgcacaaggggacgacgacgacggcgcaagaggaa
ggaagcgccaatcatgtgctggccgaacgcagaaggagggagaagctcaacgagaggttc
atgatccttcgtgcgttagttccgttcgtcaccaagatggataaagcatcgatattaggc
gacaccatcgagtacgtgaagcaactaagaaagcacattcaagaccttgaggccaagaac
aaacaaatcgaaagctgttggaggctaaaccgcacaaagcagcagcagcagcaaagcgcc
cgcaagaaggggaagctaagcgccagcggcaaccaagagctattagacaacaggctcagt
acattcgagaaacaaaagttacccgttgtggacccgaacaatagagtgctgaatctcaca
aagacgagcgaagcagccacgagtgtgtgcgtctcggtggtagaatctgaagttatcttg
gagttacaatgcagcttcagagatggactggtgttgaggattcttcagacactgcaagag
ctcggcctggaggttacttccattcagtactcctccactgatggagtctccaatgtggag
ttgcattcacagatgaaagaggtacaaggaaagagagctggaattgatgatgtaagaaag
gccattcaccaaattattgtttaa
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