KEGG   Zingiber officinale (ginger): 121979240
Entry
121979240         CDS       T08725                                 
Name
(RefSeq) GTP-binding nuclear protein Ran1A-like
  KO
K07936  GTP-binding nuclear protein Ran
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03008  Ribosome biogenesis in eukaryotes
zof03013  Nucleocytoplasmic transport
zof03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    121979240
   03008 Ribosome biogenesis in eukaryotes
    121979240
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    121979240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zof03019]
    121979240
   03009 Ribosome biogenesis [BR:zof03009]
    121979240
   03016 Transfer RNA biogenesis [BR:zof03016]
    121979240
   03036 Chromosome and associated proteins [BR:zof03036]
    121979240
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:zof04147]
    121979240
   04031 GTP-binding proteins [BR:zof04031]
    121979240
Messenger RNA biogenesis [BR:zof03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     121979240
Ribosome biogenesis [BR:zof03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    121979240
  Pre-60S particles
    121979240
Transfer RNA biogenesis [BR:zof03016]
 Eukaryotic type
  tRNA transport factors
   tRNA export factors
    121979240
Chromosome and associated proteins [BR:zof03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     121979240
   Spindle formation proteins
    121979240
Exosome [BR:zof04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   121979240
GTP-binding proteins [BR:zof04031]
 Small (monomeric) G-proteins
  Ran Family
   Ran
    121979240
SSDB
Motif
Pfam: Ras Roc Arf MMR_HSR1 RNA_helicase GTP_EFTU G-alpha Pox_A32 Gtr1_RagA ArgoMid ATPase TsaE AAA_7 AAA_24 AAA_22 AAA_33
Other DBs
NCBI-GeneID: 121979240
NCBI-ProteinID: XP_042387132
LinkDB
Position
5A:1347418..1349591
AA seq 221 aa
MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAILMFDVTARLTYKNVPTWHRDLCRVCENIPI
VLCGNKVDVKSRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
ESPALAPPEVHIDLISQQQHEAELAQAAAQPLPDDDDDVFD
NT seq 666 nt   +upstreamnt  +downstreamnt
atggcgttgccgaatcagcagaccgtcgattacccgagctttaaactcgttctcgtgggt
gatggaggaactgggaaaactacctttgtgaagaggcaccttactggtgaatttgagaag
aaatatgaacccactattggagttgaggttcatccattggatttcttcacaaactgtggg
aagatacggttttattgctgggatacagctgggcaagagaagtttggtggtcttagggat
ggatattacatccatggccagtgtgccatcctcatgtttgatgtcactgccaggttaaca
tacaaaaatgttccaacttggcatcgtgatctgtgcagggtctgtgaaaacattccaatt
gttctctgcggaaacaaggttgatgtgaagagcaggcaggtcaaggcaaagcaagttacg
ttccacagaaagaagaacctgcaatactatgagatttctgcaaagagcaattacaacttt
gagaagcccttcctttatcttgctcggaaactggcaggggatcccaatcttcactttgtt
gaatcacctgctctggcacctcctgaagtccatattgatctgatttcacagcaacagcac
gaagcagagttggctcaagctgctgctcaaccccttccagatgacgatgatgatgttttt
gactaa

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