Zingiber officinale (ginger): 121981196
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Entry
121981196 CDS
T08725
Name
(RefSeq) nuclear pore complex protein GP210-like isoform X1
KO
K14314
nuclear pore complex protein Nup210
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121981196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121981196
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121981196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_GP210_15th
Ig_GP210_16th
Ig_NUP210_1st
Ig_NUP210_7th
Big_2
Ig_NUP210_5th
Ig_NUP210_2nd
Ig_NUP210_16th
Ig_NUP210_3rd
Ig_NUP210_15th
Motif
Other DBs
NCBI-GeneID:
121981196
NCBI-ProteinID:
XP_042389531
LinkDB
All DBs
Position
5A:99412692..99463660
Genome browser
AA seq
1964 aa
AA seq
DB search
MVNRGATEVVMMLAVVVLLVLAARPVTPTSLGPHIADLNVLLPPRMTNPVQYRLQGSGGC
FSWTWDHHDFLRVEPEYNSSSRCSTSARLISISHYSGRKETAVYATDLLTGTTIRCKVIV
EMISRIQIFHRAVKIDLDELATLHIHAFDSAENEFSALVGLQFLWKLVPQSSDVDTINHL
VHVPLKETPLSDCGGFCGDLDLQIELEDRGVGSNLYVVQGSSIGHEVVSAQLFEPELEHV
DDHIILTVSEAMSLSPTSPIFVTVGALLRYNLRVIRLKTATVIDLPSLHHRWYVTNSSVA
HTDPAMGVAHALSLGTTDIVVEDTRLSGHEQRSTMHVVIPGKLCLYLVPVTNGSIPVEGV
ASISSSDVWYVFPGQEYMINIKVLTEGPDVNEILITESNDFTLESNTSRYWDLYALAGDA
MLSNWEYFRLLKPISEGKGVLSAALSFQREKLGSVEVLRAVQQINVCSKVGLVFGEHDHI
SEVIHLPWAPGIEQAFELKATGGCGNSLEDYHWFSSNAAVVSVSAFGSILAKRPGQAIIR
VVSVFDSANYDQVVIEVSIPSAMAMLPFFPVEVEIGTQFQAAVTLKTSNGYYYSRCDAFS
SSVRWKVFSESGSFRILNTTDLMASEISIHLNDYRPELGNPCSWTSLYASGVGRAVLHAS
FPLESLSSIQSMDGIVTLKTVKSLAAYYPLTAYQAGNGNQHGGYWVDLSKIDANIQDLDS
NGLDELFLAPGSSMDVLLVGGPNRWDDNTEFIETFNALGGQDLSVVQLHELSSGGRFYRI
ICQTIGEFKLLFSRGNLVGDDHPNPVLAKLELLVFCAFPSSIALIANEPVNTFDVIEASK
SAERDSTGLHVSPMTVSNECTIRVAAVSIYANGRTFANSSSLCLRWELNGCEKLAFWSDN
NHAMKLDGSKWERFLVLQNASGLCIVRATAIGFCEVGVSHLYNVAGSLFGTGEKFPTDAV
PLQLISSLKVVPESILMVLDPEAKVNLSIIGGTCLLDAYINDTRVADIVQPPQVTQCSHF
TVGAIGLGVANVIVRDNGLSPPAVASALIKVASIDWIKIISKEEISVMEGTIKSFDILAG
TEDGSVFDSSQYMYMKIKVHHEDGILEPVNEYYSPNMGSWLIHGPYFSVRAAKLGTANLY
VSVSQSGYEIASQLVKVEVYGPVRLHPDYLFLLPGVSYVLTVKGGPKIGVFVEFSSLHEG
VAIVQKSSGMLFANSIGNTTVRAAVYGIKGTLICEAFGEVEVGIPHSLVLNSQSNQLCIG
CIMPVFPSFHEGDLFSFNEVCQDYKWTVGNDKVLNFQMDRTLHSGPCENDGHPCLSVASN
SEFINLVTGRSAGKAELYISVSCDILLSGSPQQVFYNASKLLEVVPNPPVALGIPITWIF
PPFYTTSVLLPRFSDPYRQLDSHRSFSYSILRTCTSTDNFKHEGITIDEGKIITRESKDI
ACVLAKDHATSRKEIACCVRIAEISQVRVNTIEASSHVLSLAANSKLELIVTYSDYLGYP
FTEAHGVVPLDIETNRPDVLSIFTSLKSDDSMLGNDRIILEAKNPGNALVRISINNDPRK
ADFVLVSVGVQLYPRSPVLQVGQRLNFTVIGDDDVFGSGKWLSDNESVLSVNKITGEGFA
HGEGATQVIFLGSKLKLQTPVTVMKVDQISVDVPADALTNVPFPSKGYMFFVKYSGSEIL
DPKLESTGNHEVPFDCWVDPPIVGYARAWVSNVTGYSYCLFFPYSPKHLLSIMPKSNTRR
QENDNSHGLVHFSIIASLKETPTVTGSAHAVYVGGFALGTEKLNFTPIATRSLVTIMGNT
DVEISWNAKDLLSVTSLGTTSFGVVGLAEYEVKVLQNKPFEDTIIVHLPSTGQQEEISVS
YKNGERAAASGVNNFIWPAVLVCAIVFIVTVIIFLMCLQKPDQPGPRQSGPISPLPAPRD
STPTRNVQFSPHTPPPFTDYVRRTIDETPYYKRDRRRLDPQYTY
NT seq
5895 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaccgcggagccaccgaggtggtgatgatgctggcggttgtggttctgttggtg
ctggctgcgcggccggtgacgccaacctcgctggggcctcacatcgctgatctgaacgtg
ctcctgcctcctcgaatgaccaaccccgtccagtatcgcctccagggaagcggcggatgc
ttctcttggacttgggatcatcatgatttcctgagggttgaaccagagtacaatagcagc
agtaggtgctcaacaagtgctagattgatatctatttcacattatagtggaaggaaggag
actgcagtgtatgccactgatctactaactgggactacaatacggtgcaaagtcattgta
gagatgatatcaaggatccaaatttttcaccgtgctgtgaaaattgatctagatgaactt
gccacattgcacattcatgcttttgatagtgcagaaaatgagttctcagcattggtgggt
ttacagttcttgtggaaacttgtgcctcaatcttcagatgttgataccatcaatcatctt
gttcatgtccctttgaaggaaacaccactaagtgactgtggtggtttctgtggcgatctg
gatctgcaaattgagctggaagatagaggtgtaggctccaacttatatgtagtccagggt
tcttcaattggtcatgaagttgtaagtgctcagttatttgagccagaacttgagcatgtg
gacgaccatattatattgactgtttctgaagctatgtcgctgagtcctacatcaccaatc
tttgtcactgttggcgctttattacgctacaatctgagggttattcgcctgaagactgct
acagttattgatcttccatccctgcatcatagatggtatgtgacaaattcttcagtggct
catactgaccctgcgatgggagttgctcatgccttgagtcttggtacaactgatattgtt
gttgaggacactagactttctggtcatgagcagagatcaaccatgcatgtagtcattcct
ggtaaactgtgtctgtatctagtaccagtgaccaatggctccattcctgtagaaggggtg
gcttctatttcttcctcagatgtttggtacgtctttcctggccaagagtacatgattaac
attaaagtcttaacggaaggccctgatgtaaatgaaatactcataacagagagcaatgac
tttacattggaaagtaacacttcaagatactgggatttgtatgctctagctggagatgcc
atgttaagtaactgggaatattttagattgcttaagccaatttccgaaggaaaaggtgtt
ctgagtgctgctctttcttttcagagagaaaaattaggatctgtcgaggttctgagggct
gtgcagcaaattaatgtctgcagcaaagttggtttagtatttggagaacatgatcatatt
tctgaagtcattcaccttccttgggctcctggaatcgaacaggcatttgaactaaaggca
actggagggtgtgggaatagccttgaagactaccattggttttcatctaacgcggcagtt
gtttctgtatctgcttttggttctattctagctaaaaggcctggtcaagccatcattaga
gtagtttcagtgtttgattctgcaaactatgatcaggttgttatagaggtctccattccc
tctgcaatggctatgttgccatttttccccgtagaggtggaaattggaacacaatttcag
gctgctgtgacattgaagacgtcaaatggttactactacagcagatgtgatgcttttagc
tcttctgtcaggtggaaagtattttcagaaagtggttctttcagaattctgaatactaca
gatttgatggcttcagagatttccattcacttgaatgattatagaccagaattggggaac
ccttgttcatggacatctctatatgcttctggtgttggccgagctgtgctgcatgcaagt
tttccccttgaatcactctcttctatacagtctatggatggaatcgtaacattaaagact
gttaaatctttagcggcatattatcctcttactgcttatcaggcaggaaatggaaatcaa
cacggtggttactgggttgatttatctaagatagatgccaacatacaagatttagatagt
aatggtcttgatgagttgtttcttgctcctggttcatcaatggacgtattgttagttgga
ggacctaacagatgggatgacaacactgagttcattgaaacattcaatgctttaggtggg
caggatttgtcagttgttcagctacatgaattatccagtggcgggagattttacagaatc
atttgccaaacaattggggagtttaaattactcttttcacgtggaaatctagttggagat
gatcatccaaatcccgtgttagcaaaattggaattgcttgttttttgtgcctttccttct
tcaattgcactgattgctaatgaaccagtgaacacatttgatgttattgaggcttccaag
agtgcagagcgtgactctacgggacttcatgtttctcctatgactgtgtctaatgaatgt
acaatacgcgtagctgctgttagtatttatgcaaatggaagaaccttcgcaaactcttcg
tccctttgcttgagatgggaactcaatggttgtgaaaaattggccttttggagtgacaac
aatcacgccatgaaacttgatgggtcaaagtgggagaggtttctggttttgcaaaatgcc
tcaggattgtgcattgtacgtgctactgcaattggattttgtgaagtaggtgtcagtcat
ctttacaatgttgctggttctttgtttggaactggagaaaagtttcctacagatgctgtg
ccattacagttaatttcttcattaaaagttgtaccagagtctatcttaatggttttggat
cctgaagcaaaggttaatctttcaattattggaggaacttgtttgctagatgcgtatata
aatgatacacgggtggcagatatagtccaacctcctcaagttactcaatgttcccacttc
actgttggtgctataggattgggagtggccaatgtaatagttcgtgataatgggctttca
cctcctgccgttgcttcagctttgattaaagtggctagcattgactggattaagattata
tcaaaagaggaaataagtgttatggaaggaaccatcaaaagttttgatattttggccgga
acagaggatggaagtgtctttgactcttctcagtacatgtatatgaaaattaaagtacat
catgaggatggcatacttgaacctgtcaatgagtactattcgccaaatatgggctcttgg
cttatacacggaccatacttctcagtgagggctgcaaagcttggtactgcaaatctttat
gtcagtgtcagtcaatcaggttatgaaattgcaagtcaacttgtgaaggttgaagtatat
ggaccagtacgcctacatcccgactatctgtttcttctacctggtgtctcctatgtgctg
acagtgaaaggtggccccaaaattggagtttttgttgagttctctagcttacatgaagga
gttgcaatagttcaaaaatcgtcggggatgctttttgctaattcaattggaaatacaact
gttcgagcagctgtctatggaatcaagggtaccttaatatgtgaagcatttggagaagtt
gaagttggaattccacattcattggtcttgaattcacaaagtaatcaactttgtattggc
tgcatcatgcctgtctttccatcttttcatgagggagacttattctctttcaatgaagtt
tgtcaagattataaatggactgtagggaatgacaaggtgcttaacttccagatggataga
actttgcattctggtccctgtgagaatgatggacatccatgcctttcagttgctagtaac
agtgaatttatcaaccttgtgactggaagatctgcaggtaaagctgaactatatatttct
gtgtcgtgtgatattttgttgtctggttctcctcagcaagtattttacaatgcttcaaag
ttgttggaagttgtaccaaatcctccagtggcacttggaataccaattacttggatcttt
ccacctttttataccacttcagtacttttgccaaggttttcagatccatataggcaattg
gattctcatagaagttttagttattctatcctgaggacatgcacaagtactgataatttt
aaacatgaaggtattactattgatgaaggtaaaattataacaagggaaagcaaggatatt
gcttgtgttctagcaaaagatcatgcaactagtagaaaagaaattgcatgctgtgtaagg
attgcagagatttcacaagttagggtaaacacaattgaagcttcatcacatgttctttcc
cttgctgctaattcaaaactcgagttaattgtcacctactcagattatttagggtatcct
ttcactgaggcccatggtgtagttccactggatattgaaactaatcgtcctgatgttctc
tctatttttacgtcactgaagtctgatgacagcatgcttggcaatgatcgtatcatttta
gaggcaaagaatcctggcaatgctcttgtaaggatatccatcaataatgacccaaggaag
gcagattttgtgttggtatctgttggcgttcaactttatccgaggagtccagttcttcaa
gtcggtcagcgtctcaattttactgtaattggtgatgatgatgtatttggctctggcaag
tggttgagtgataatgaaagtgttctatcggtaaataagataactggagaaggatttgct
catggggaaggtgcaactcaagttattttccttggttcaaaattaaagttgcagacacct
gtaaccgtgatgaaagttgatcagatatcagttgatgttccagcagatgccttgactaat
gtgccatttccatctaaaggttacatgttctttgtgaaatatagtggaagtgaaatcttg
gatcccaagctggaatctacaggaaatcatgaagtcccatttgattgttgggttgatcca
ccaatagttgggtatgcaagggcatgggtcagcaatgtcacaggctactcctactgtctc
ttctttccttattcaccaaaacatttactcagtatcatgcccaagtcaaatacaagacgt
caagagaatgataatagtcacggattggtacacttctcgattattgcatcattgaaagag
actccaactgttactgggtctgcacatgcagtatatgttggcggatttgctctaggcact
gaaaagctaaacttcacaccaattgccactaggagtcttgtgacaatcatggggaataca
gatgtcgaaataagttggaatgcgaaagatctattgtccgtcacttctcttggcactaca
agttttggtgtggttggactcgcagaatatgaggtcaaagtccttcaaaacaaaccattt
gaagacacaatcattgttcatcttccttccactggtcagcaagaggagattagtgtctct
tataagaatggagaaagagcagctgcctctggcgtgaacaatttcatctggcctgcagtg
ttagtctgtgctattgtgtttatagtcacagttattatcttcttaatgtgtctccagaaa
ccagaccagcctggacctagacaatcaggaccaatatctccccttcccgccccgagagat
tccacacccactagaaatgttcaattttctcctcacacgccaccaccattcaccgattat
gtgaggagaacgattgatgaaactccatattataagcgggacaggaggaggcttgaccca
caatacacatactga
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