KEGG   Zingiber officinale (ginger): 121982239
Entry
121982239         CDS       T08725                                 
Name
(RefSeq) survival of motor neuron-related-splicing factor 30-like isoform X1
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121982239
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:zof03041]
    121982239
Spliceosome [BR:zof03041]
 Complex A
  U2 snRNP components
   U2 related factors
    121982239
 Complex B
    121982239
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    121982239
SSDB
Motif
Pfam: SMN_Tudor Agenet TUDOR SH3_3
Other DBs
NCBI-GeneID: 121982239
NCBI-ProteinID: XP_042391145
LinkDB
Position
5A:complement(145521244..145557634)
AA seq 287 aa
MQGGEDLSIEELASNLSTYKDQLREIKKILADDPGNSEYIDMEKELEEVIALTEELLTTA
KPTDFHRLDSVASPNTHFDGTSHSKPYGSFPVGTKVQAVWSEDGEWYDATIESITPNGYF
VSYEVWGNTEEVDFANVRPVEEVNALLEAEREAEATRQAIKRKIAQAAITDFQARTLPAK
LRIDPNDPDDVKAAKRKKIHSFKSKVRSEQLEVAQNKRQNAWQQFQSAKGKTKKIGFFSG
RKRESIFKSPDDPNGKVGVIGSGKGLTEFQKREKHLHLKGGTVDTEE
NT seq 864 nt   +upstreamnt  +downstreamnt
atgcaagggggagaggatttaagcatcgaggagctcgcttccaatctctctacttacaaa
gatcagctccgcgagattaaaaagattttggctgatgaccctggaaactctgaatatata
gatatggagaaggaacttgaagaggttattgcattgacagaggagcttctgacaactgca
aagccaacagattttcatcggcttgattctgttgcatctcccaacactcattttgatggg
acatctcactccaagccatatggaagttttcctgttggtactaaagtccaagcagtttgg
agcgaagacggggaatggtatgatgcaaccattgaatctattactcctaatggatatttt
gtctcctatgaagtctggggaaacacggaggaggtggattttgctaatgttaggccagtt
gaagaggtgaatgcattactagaagctgaaagggaagctgaagctaccagacaggctatc
aaaaggaaaattgcacaagctgctataactgacttccaagcacgaactttacctgctaaa
cttcgcatcgatcccaatgatccagatgatgtgaaagctgctaagcggaagaaaatacac
tctttcaagtcaaaggttcgaagtgagcaacttgaagttgcacaaaataagcggcagaat
gcatggcagcaattccaatccgccaaaggaaagacgaaaaagattgggttcttctctggg
cgcaagcgagaaagtatcttcaagtctccagatgatcccaacggtaaggttggtgttatc
ggcagcggaaagggactgacagagttccagaagagggagaaacacttgcatcttaaggga
ggcactgtggatacagaggagtag

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