Zingiber officinale (ginger): 121984863
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Entry
121984863 CDS
T08725
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
KO
K16189
phytochrome-interacting factor 4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
121984863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
121984863
Transcription factors [BR:
zof03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
121984863
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
121984863
NCBI-ProteinID:
XP_042393946
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Position
5B:88127247..88130317
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AA seq
484 aa
AA seq
DB search
MNRYVPNWAMEDDSGCFTDLYPTKTMGLDNELVELLWRNGHVVMHSQTHRRATANNKTDQ
FQKQEPSIGNSSSSIQEAETLPWFQYPLDDLFERELYSEFFENIDTDEMNKDLIAEEECH
NGFTPCALKQSTIPSSQEQHTMPLPTLHCLSSTPQSSCLDNGGRPPLKVAAAESTRITTG
SSICGSNQIRAYTDPANSLNNDEARNVTGSLREDSEMRLPLKRTRSKVPEGTVTSSSGGS
GCSYGRAGQPNASGQSHKRKAREVEYSGCQSENLQEAEYDSIKANKSAQRPTSKRRTRAA
EVHNLSERKRRDRINEKMKALQELIPHCNKTDKASMLDEAIEYLKSLQLQVQMMWMGSGM
ASMMLPGVQQYISGIGMGIGHVSMPTIPSTVQLPRVSIANQSVNPTFSSSQTTTFPSLAT
SSVNCSNQLQNNRVPELYGRYLSMHMVPPHQAMNFCTYGSHLLQQNQSAMTPNSSPLTKA
VGKQ
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgatatgtacctaattgggcaatggaagatgactctggttgcttcacagatctc
tatcccacgaaaacaatgggattggacaatgagctggtggagctcttgtggagaaatgga
catgttgtgatgcacagtcaaactcaccggcgtgccactgccaacaacaagactgatcag
tttcagaaacaagagccatctattggcaactccagtagctcgattcaagaagctgaaacc
ttgccatggttccagtatcccctcgatgatctgttcgagagggagctgtactccgagttc
tttgagaacatagacactgatgagatgaacaaggacttgattgcagaagaggagtgccat
aatggcttcacaccatgtgctctgaagcagtccactattcctagctcgcaagaacaacac
accatgccccttcccacattgcattgcttgagttctacaccgcagtcttcatgcttggac
aatggtggtcgtcctccgctcaaggtagccgctgcagagtctacgaggataactactgga
tcgagcatctgcggaagcaatcaaattcgagcctacactgatccagccaattctttaaac
aatgatgaagctagaaatgtcacaggatcattgagagaggacagtgagatgagattacca
ttgaagagaactcgctcaaaggtgcccgagggcactgtaacttcatcgtcgggtggttct
ggctgtagttatggaagagcaggacagccaaatgcgagtggccaaagccacaagaggaag
gcaagagaggtggaatattctgggtgtcaaagtgagaacttgcaggaagccgagtatgat
tcgatcaaggcaaacaaatcagctcagagaccgacatctaaacgcagaactcgtgctgct
gaagtccacaatctctctgagagaaaaagaagagataggattaacgaaaaaatgaaggct
ctacaggaactcatacctcattgcaacaagacagataaagcctcaatgcttgatgaggca
attgagtacctgaagtcacttcaactacaagttcagatgatgtggatgggaagtggaatg
gcatcgatgatgttacccggtgtccaacaatacatttcaggcattggaatgggaataggc
catgtttcaatgcctactattcctagtacagttcaactaccaagagtttcaatcgctaac
caatcagtcaacccaactttcagctcaagccagaccacaacattcccctccctggccaca
agttcagtaaattgttcgaatcagctgcagaataatcgtgttcctgaattgtatggcaga
tatcttagcatgcatatggtgcctccacatcaggcgatgaacttttgtacatatggatct
cacttattgcagcagaatcagtcggcaatgacacctaatagcagtcccctaactaaagct
gtagggaaacaataa
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