Zingiber officinale (ginger): 121985071
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Entry
121985071 CDS
T08725
Name
(RefSeq) nuclear pore complex protein GP210-like isoform X1
KO
K14314
nuclear pore complex protein Nup210
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121985071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121985071
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121985071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_GP210_15th
Ig_GP210_16th
Ig_NUP210_1st
Ig_NUP210_7th
Big_2
Ig_NUP210_2nd
Ig_NUP210_3rd
Ig_NUP210_15th
Motif
Other DBs
NCBI-GeneID:
121985071
NCBI-ProteinID:
XP_042394271
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All DBs
Position
5B:95700424..95743155
Genome browser
AA seq
1964 aa
AA seq
DB search
MVNRGATEVVMMLAVVVLLVLAARPVTPTSLGPHIADLNVLLPPRMTNPVQYRLQGSGGC
FSWTWDHHDFLRVEPEYNSSSRCSTSARLISISRYSGRKETAVYATDLLTGTTIRCKVIV
EMISRIQIFHRAVKIDLDELATLHIHAFDSAENEFSALVGLQFLWKLVPQSSDVDTINHL
VHVPLKETPLSDCGGFCGDLDLQIELEDRGVGSNLYVVQGSSIGHEVVSAQLFEPELEHV
DDHIILTVAEAMSLSPTSPIFVTVGALLRYNLRVIRLKTATVIDLPSLHHRWYVTNSSVA
HTDPAMGVAHALSLGTTDIVVEDTRLSGHEQRSTMHVVIPGKLCLYLVPVTNGSIPVEGV
ASISSSDVWYVFPGQEYMINIKVLTEGPDVNEILITESNDFTLESNTSRYWDLYALAGDV
MLSNWEYFRLLKPISEGKGVLSAALSFQREKLGSVEVLRAVQQINVCSKVGLVFGEHDHI
SEVIHLPWAPGIEQAFELKATGGCGNSLEDYHWLSSNAAVVSVSAFGSILAKRPGQAIIR
VVSVFDSANYDQVVIEVSIPSAMAMLPFFPVEVEIGTQFHAAVTLKTSNGYYYSRCDAFS
SSVRWKVFSESGSFRILNTTDLMASEISIHLNDYRPELGNPCSWTSLYASTVGRAVLHAS
FPLESLSSIQSMDGIVTLKTVKSLAAYYPLTAYQAGNGNQHGGYWVDLSKRDANIQDLDS
NGLDELFLAPGSSMDVLLVGGPNRWDHNTEFIETVNALGGQDLSVVQLHELSSGGRFYRI
ICQTIGEFKLLFSRGNLVGDDHPNPVLAKLELFVFCAFPSSIALIANEPVNTFDVIEASK
SAERDSTGLHVSPMPVSNECTIRVAAVSIYANGRTFANSSSLCLRWELNGCEKLAFWSDN
NHAMKLDGSKWERFLVLQNASGLCIVRATAIGFCEVGASHLYNVAGSLFGAGEKFPTDAV
PLQLISSLKVVPESILMVLDPEAKVNLSIIGGTCLLDAYINDTRVADIVQPPQITQCSHV
TVGAIGLGVANVIVRDNGLSPPAVASALIKVASIDWIKIISKEEISVMEGTIKSFDILAG
TEDGSVFDSSQYMYMKIKVHHEDGILEPVNEYYSPNMGSWLIHGPYFSVRAAKLGTANLY
VSVSQSGYEIASQLVKVEVYGPVRLHPDYLFLLPGVSYVLTVKGGPKIGVFVEFSSLHEG
VAIVQKSSGMLFANSIGNTTVRAAVYGIKGTLICEAYGEVEVGIPHSLVLNSQSNQLCIG
CIMPVFPSFHEGDLFSFNEVCQDYKWTVGNDKVLNFQMDRTLHSGPCENDGHPCLSVASN
SEFINLVTGRSAGKAELYISVSCDILLSGSPQQVFYNASKLLEVVPNPPVALGIPITWIF
PPFYTTSVLLPRFSDPYRQLDSHRSFSYSILRTCTSTDNFKHEGISIDEGKIITRESKDI
ACVLAKDHATSRKEIACCVRIAEISQVRVNTIEASSHVLSLAANSKLELIVTYSDYLGYP
FTEAHGVVPLDIETNRPDVLSIFTSLKSDDSMLGNGRIILEAKNPGNALVRISINNDPRK
ADFVLVSVGIQLYPRSPVLQVGQRLNFTVIGDDDVFGSGKWLSDNESVLSVNKITGEGFA
HGEGATQVIFLGSKLKLQTPVTVMKVDQISVDVPADALTNVPFSSKGYMFFVKYSGSEIL
DPKLESTGNHEVPFNCWVDPPIVGYARAWVNNVTGYSYCLFFPYSPKHLLSIMSKSNTRR
QENDNSHGLVHFSIIASLKETPTVTGSAHAVYVGGFALGTEKLNFTPIATRSLVTIMGNT
DVEIRWNAKDLLSVTSLSTTSFGVVGLAEYEVKVLQNKPFEDTIIVHLPSTGQQEEISVS
YKNGERAAASGVNNFIWPAVLVCAIVFIVTVIIFLTCLQKPDQPGPRQSGPISPLPAPTD
STPTRNVQFSPHTPPPFTDYVRRTIDETPYYKRDRRRLDPQYTY
NT seq
5895 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaccgcggagccaccgaggtggtgatgatgctggcggttgtggttctgttggtg
ctggctgcgcggccggtgacgccaacctcgctggggcctcacatcgctgatttgaacgtg
ctcctgcctcctcgaatgaccaaccccgtccagtatcgcctccagggaagcggcggatgc
ttctcttggacttgggatcatcatgatttcctgagggttgaaccagagtacaatagcagc
agtaggtgctcaacaagtgctagattgatatctatttcacgctatagtggaaggaaggag
actgcagtgtatgccactgatctactaactgggactacaattcggtgcaaagtcattgta
gagatgatatcaaggatccaaatttttcaccgtgctgtgaaaattgatctagatgaactt
gccacattgcacattcatgcttttgatagtgcagaaaatgagttctcagcattggtgggt
ttacagttcttgtggaaacttgtgcctcaatcttcagatgttgataccatcaatcatctt
gttcatgtccctttgaaggaaacaccactaagtgactgtggtggtttctgtggcgatctg
gatctgcaaattgagctggaagatagaggtgtaggctccaacttatatgtagtccagggt
tcttcaattggtcatgaggttgtaagtgctcagttatttgagccagaacttgagcatgtg
gacgaccatattatattgactgttgctgaagctatgtcgctgagtcctacatcaccaatc
tttgtcactgttggcgctttattacgctacaatctgagggttattcgcctgaagactgct
acagttattgatcttccatccctgcatcatagatggtatgtgacaaattcttcagtggct
catactgaccctgcgatgggagttgctcatgccttgagtcttggtacaactgatattgtt
gttgaggacactagactttctggtcatgagcagagatcaaccatgcatgtagtcattcct
ggtaaactgtgtctatatctagtaccagtgaccaatggctccattcctgtagaaggggtg
gcttctatttcttcctcagatgtttggtacgtctttcccggccaagagtacatgattaac
attaaagtcttaacggaaggccctgatgtaaatgaaatactcataacagagagcaatgac
tttacattggaaagtaacacttcaagatactgggatttgtatgctctagctggagatgtc
atgttaagtaactgggaatattttagattgcttaagccaatttccgaaggaaaaggtgtt
ctgagtgctgctctttcttttcagagagaaaaattaggatctgtcgaggttctgagggct
gtgcagcaaattaatgtctgcagcaaagttggtttagtatttggagaacatgatcatatt
tctgaagtcattcaccttccttgggctcctggaatcgaacaggcatttgaactaaaggca
actggagggtgtgggaatagccttgaagactaccattggttatcatctaacgcggcagtt
gtttctgtatctgcttttggttctattctagctaaaaggcctggtcaagcaatcattaga
gtagtttcagtgtttgattctgcaaactatgatcaggttgttatagaggtctccattccc
tctgcaatggctatgttgccatttttccccgtggaggtggaaattggaacacaatttcat
gctgctgtgacattgaagacgtcaaatggttactactacagcagatgtgatgcttttagc
tcttctgtcaggtggaaagtattttcagaaagtggttctttcagaattctgaatactaca
gatttgatggcttcagagatttccattcacttgaatgattatagaccagaattggggaac
ccttgttcatggacatctctatatgcttctactgttggccgagctgtgctgcatgcaagt
tttccccttgaatcactctcttctatacagtctatggatggaatcgtaacattaaagact
gttaaatctttagcggcatattatcctcttactgcttatcaggcaggaaatggaaatcaa
cacggtggttactgggttgatttatctaagagggatgccaacatacaagatttagatagt
aatggtcttgatgagttgtttcttgctcctggttcatcaatggacgtattgttagttgga
ggacctaacagatgggatcacaacactgagttcattgaaacagtcaatgctttaggtggg
caggatttgtcagttgttcagctacatgaattatccagtggtgggagattttacagaatc
atttgccaaacaattggggagtttaaattactcttttcacgtggaaatctagttggagat
gatcatccaaatcctgtgttagcaaaattggaattgtttgttttttgtgcctttccttct
tcaattgcgctgattgctaatgaaccagtgaacacatttgatgttattgaggcttccaag
agtgcagagcgtgactctacgggacttcatgtttctcctatgcctgtgtctaatgaatgt
acaatacgcgtagctgctgttagtatttatgcaaatggaagaacctttgcaaactcttcg
tccctttgcttgagatgggaactcaatggttgtgaaaaattggccttttggagtgacaac
aatcacgccatgaaacttgatgggtcaaagtgggagaggtttctggttttgcaaaatgcc
tcaggattgtgcattgtacgtgctactgcaattggattttgtgaagtaggtgccagtcat
ctttacaatgttgctggttctttgtttggagctggagaaaagtttcctacagatgccgtg
ccattacagttaatttcttcattaaaagttgtaccagagtctatcttaatggttttggat
cctgaagcaaaggttaatctgtcaattattggaggaacttgtttactagatgcatatata
aatgatacacgggtggcagatatagtccaacctcctcaaatcactcaatgttcccacgtc
actgttggtgctataggattgggagtggccaatgtaatagttcgtgataatgggctttca
cctcctgccgttgcttcagctttgattaaagtggctagcattgactggattaagattata
tcaaaagaggaaataagtgttatggaaggaaccatcaaaagttttgatattttggctgga
acagaggatggaagtgtctttgactcttctcagtacatgtatatgaaaattaaagtacat
catgaggatggcatacttgaacctgtcaatgagtactattctccaaatatgggctcttgg
cttatacacggaccatacttctcagtgagggctgcaaagcttggtactgcaaatctttat
gtcagtgtcagtcaatcaggttatgaaattgcaagtcaacttgtgaaggttgaagtatat
ggaccagtacgcctacatcccgactatctgtttcttctacccggtgtctcctatgtgctg
acagtgaaaggtggccccaaaattggagtttttgttgagttctctagcttacatgaagga
gttgcgatagttcaaaaatcgtcggggatgctttttgccaattcaattggaaatacgact
gttcgagcagctgtctatggaatcaagggtaccttaatatgtgaagcatatggagaagtt
gaagttggaattccacattcattggtcttgaattcgcaaagtaatcaactttgtattggc
tgcatcatgcctgtctttccatcttttcatgagggagacttattctctttcaatgaagtt
tgtcaagattataaatggactgtagggaatgacaaggtgcttaacttccagatggataga
actttgcattctggtccctgtgagaatgatggacatccatgcctttcagttgctagtaac
agtgaatttatcaaccttgtgactggaagatctgcaggtaaagctgaactatatatttct
gtgtcgtgtgatattttgttgtctggttctcctcagcaagtattttacaatgcttcaaag
ttgttggaagttgtaccaaatcctccagtggcacttggaataccaattacttggatcttt
ccacctttttataccacttcagtacttttgccaaggttttcagatccatataggcaattg
gattctcatagaagttttagttattctatcctgaggacatgcacaagtactgataatttt
aaacatgaaggtattagtattgatgaaggtaaaattataacaagggaaagcaaggatatt
gcttgtgttcttgcaaaagatcatgcaactagtagaaaagaaattgcatgttgtgtaagg
attgcagagatttcacaagttagggtaaacacaattgaagcttcatcacatgttctttcc
cttgctgctaattcaaaactcgagttaattgtcacctactcagattatttagggtatcct
ttcactgaggcccatggtgtagttccactggatattgaaactaatcgtcctgatgttctc
tctatttttacgtcactgaagtctgatgacagcatgcttggcaatggtcgtatcatttta
gaggcaaagaatcctggcaatgctcttgtaaggatatccatcaataatgacccaaggaag
gcagattttgtattggtatctgttggcattcaactttatccgaggagtccagttcttcaa
gtcggtcagcgtctcaattttactgtaattggtgatgatgatgtatttggctctggcaag
tggttgagtgataatgaaagtgttctatcggtaaataagataactggagaaggatttgct
catggggaaggtgcaactcaagttattttccttggttcaaaattaaagttgcagacacct
gtaaccgtgatgaaagttgatcagatatcagttgatgttccagcagatgccttgactaat
gtgccattttcatctaaaggttacatgttctttgtgaaatatagtggaagtgaaatcttg
gatcccaagctggaatctacaggaaatcatgaagtcccatttaattgttgggttgatcca
ccaatagttgggtacgcaagggcatgggtcaacaatgtcacaggctactcctactgtctc
ttctttccttattcaccaaaacatttactcagtatcatgtccaagtcaaatacaagacgg
caagagaatgataatagtcacggattggtacacttctcgattattgcatcattgaaagag
actccaactgttactgggtctgcacatgcagtatatgttggcggatttgctctaggcact
gaaaagctaaacttcacaccaattgccactaggagtcttgtgacaatcatggggaataca
gatgtcgaaataagatggaatgcgaaagatctattgtccgtcacttctcttagcactaca
agttttggtgtggttggactcgcagaatatgaggtcaaagtccttcaaaacaaaccattt
gaagacacaataattgttcatcttccttccactggtcagcaagaggagattagtgtctct
tataagaatggagaaagagcagctgcctctggcgtgaacaatttcatctggcctgcagtg
ttagtctgtgctattgtgtttatagtcacagttattatcttcttaacgtgtctccagaaa
ccagaccagcctggacctagacaatcaggaccaatatctccccttcccgccccgacagat
tccacacccactagaaatgttcaattttctcctcacacgccaccaccattcaccgattat
gtgaggagaacgattgatgaaactccatattataagcgggacaggaggaggcttgaccca
caatacacatactga
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