Zingiber officinale (ginger): 121990741
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Entry
121990741 CDS
T08725
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like
KO
K12126
phytochrome-interacting factor 3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04075
Plant hormone signal transduction
zof04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
121990741
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
121990741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
121990741
Transcription factors [BR:
zof03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
121990741
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Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_LHW
bHLH_SAC51
Herpes_UL7
FapA
Motif
Other DBs
NCBI-GeneID:
121990741
NCBI-ProteinID:
XP_042400754
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Position
6B:complement(9706934..9709271)
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AA seq
633 aa
AA seq
DB search
MLRHKQEIIQPRMTNDSSDPFAISDNEFADLLWENGQIVIQSQTSRAPKSSFPSTAFCYG
TVQAKQTREKDPKFSQSRSDGHDYCTTKHSANRGVNTQEDDTVPWISFPVEEVLTSETLQ
PQNDYCAEFLNEFLAFDMDPLSAPKCSIAATGQSDKFSQEVRRSNNTDRSHATKAPRWNW
ASGRMKATHPQQNHASALNSKSTVVDSCGSAIDVAQKLHCRDVMDRRLQNQGLKSSKQLQ
QPTISGLMNFSHFARPAALAKVTHQSAVGWKRIDKASPPPNSNPVRLTPIKSVSSTKDAN
KVSGQSGSDPHKLVLGSAMEDLQGGGSVELSNKIRTEDALRKTIQNCTKMPDNLPSSNVA
TSMVLCGHDIEAPEAALPYMCSVKITGTASNEPKHGEKRKECDEEELGYLSHSEDLQEKS
ADIRKPPNGSNAQTKRSHAAEVHNLSERLFIQRRRNRINEKMRALQELIPNCNKVDKASM
LEEAIEYLKTLQMQIQIMSTGSRLYMPPMMLTPAMQHMHTPTLPNFSPANLRMSTSTELV
LGCPVLPIPPMHVPQFPCAPSSRQSGLNGIPRHENPSSFGIQRPGIPVLMPRPPQFSTLA
GPSMNTDSAPEVHAQTAIADTEEHERQNLNVSP
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgttgaggcataagcaagaaatcatacaaccaaggatgacaaatgattcatctgacccg
ttcgctatatctgataatgagtttgctgatctattatgggagaatggtcaaattgtgata
cagagccagactagtagggctccaaagagctcctttcctagcactgccttctgttatggc
acagttcaagcaaaacagaccagggaaaaagatccaaaattctctcagtcgcgatctgat
ggacatgattattgcacaacaaagcattctgcgaacaggggagtgaatactcaagaagat
gatactgtcccatggattagttttccagtcgaggaagtcttgacaagtgagactctccag
ccccagaatgattattgtgctgagttcttgaatgagttcttagcatttgatatggatcct
ctttccgcacccaagtgtagtattgctgcaacaggtcaatctgacaagttcagtcaagaa
gttaggagatcaaacaacacggacaggagccatgctactaaagcacctagatggaattgg
gcgtcgggcagaatgaaggccacccatccacagcaaaatcatgcttcagctcttaattca
aagtcgactgtagttgatagctgtggtagtgctatcgacgtagctcaaaaactgcattgt
agggatgtgatggacagaaggttgcaaaatcagggattgaaaagttccaagcaactgcag
caaccaaccatatctggtctgatgaacttctcccattttgcaagacctgctgcactagcc
aaggttacacatcaaagtgctgttggatggaaaagaattgacaaggcctcccctcctcca
aacagcaatccagtcagattgacacctattaaaagtgttagcagtactaaggatgctaac
aaggtatcagggcagtctggctcagatccacacaagttggtattgggttcagctatggaa
gatcttcaaggaggaggctcagttgagttgtctaataaaattcgtacagaagatgctttg
aggaagactattcagaattgcactaaaatgccagataatcttccaagctcaaatgtggca
acaagtatggtcttgtgtggacatgacatagaagctcctgaagcagcattgccttatatg
tgttcagtgaaaataactggaactgcatcgaatgaaccaaaacatggtgaaaagagaaag
gaatgtgatgaagaagagcttgggtatctcagccacagcgaagatctccaagagaaatca
gcagacataaggaaaccaccaaacggaagcaatgcacaaacaaagagaagccatgctgca
gaagttcacaatttatcagaaagattatttatccagcggaggaggaacaggattaatgag
aaaatgcgtgcactgcaagagcttatacccaactgtaacaaggtggacaaagcttcaatg
cttgaagaggccattgagtatctcaaaacacttcagatgcaaattcagatcatgtccacg
ggaagcaggctgtatatgccaccgatgatgttaactcctgcaatgcaacacatgcataca
ccaacgctgcccaatttctcaccagcaaacctaagaatgagcacaagcacagaattagtc
ctgggttgtccagtgctcccaattccaccaatgcatgtaccgcagtttccatgcgctcca
agttccagacaatcaggcttgaatgggatacccagacatgaaaatccttcatcatttgga
atccaaaggccagggattccagttttgatgccacgacctcctcaatttagtaccttggca
gggccttctatgaatacagactctgcaccagaggtacatgcacaaactgctatagcagat
actgaagagcatgagcgtcagaacttgaatgtaagcccataa
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