Zingiber officinale (ginger): 121992702
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Entry
121992702 CDS
T08725
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
121992702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121992702
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
121992702
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
121992702
NCBI-ProteinID:
XP_042403162
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Position
6B:73660306..73671970
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AA seq
850 aa
AA seq
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MGIPAFYRWLADRYPLSVVQVCEETAKMVNGVRIPVDTTRPNPNGVEFDNLYLDMNGIVH
PCFHPEDRPAPKSYDEVYKAIFAYIDHIFSMIRPRKLLYMAVDGVAPRAKMNQQRARRFR
AAKDAADAEAEAEKLKDEFESHLEKFCHQQTSKMDSNVITPGTLFMDCLSSALRYYICLR
LNKDPGWRSVKVILSDASVPGEGEHKIAAYIRSQRNLPGFDPNTRHCLYGLDADLIMLAL
ATHEIHFSILREDVRVAKFDQRNSKSVYKKKCSNKGEEGKESNHDIGYEDSRKKFQFLNI
WILRDYLQHELKVFGANMKIDLERLIDDFVFICLFVGNDFLPHVPSLEISEGAIDLLTMV
YKKEFAAMGGYLTNSFEVNLERVEHFLQVVGSHESAIFRKRVQLQKERNSHSKGPNSMAI
EPQVECAWMESFERSSNSFGRNISDRISCATAEHFQVGQGEEDWKEKYYSEKFEVNSKDE
CQRVKQNTVKHYVEGICWVMHYYYQGVCSWQWFYPHHYAPFASDFVGLKNLEIQFKIGVP
FKPFDQLMGVLPAASAHALPSSYKDLMINPSSSIIDFYPADFELDLNGKRFSWQAVCKLP
FVDESRLLAEIKRVEDTLTEEEKERNSWTMDVLFVHFSHPLTSKILSFYQRKKDNPKLGK
AKLKKRIDPEISDGMNGLIYISDKTMFSFEIYSPVEGMEAITQNKTISTYFKAPSIQTHI
ARLPDGITLPNKSISKKHIPPVPGLWHETLISKRQAHLNRPIPHAIEGHLLLKLAHKLVT
NYYGEKMKQDSVRLDKKAFDDKCNKKLKELTTTISILGKRKCRGQEHNQNTNKRRHHKTK
GTNRRKRRRN
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgggaattccggctttttaccggtggctggccgaccgttaccccctttccgtggtgcag
gtctgcgaagaaactgccaaaatggtcaatggggtccggatcccagtagacactaccagg
ccgaaccctaacggcgtcgagttcgacaacctctacctggatatgaacggcatcgtccac
ccttgcttccatccggaagaccggcctgctcccaagtcgtatgatgaagtctacaaagct
atttttgcttacattgatcacattttctccatgattcgtccccggaagctcctgtacatg
gcagttgatggagtggcacccagagcaaagatgaaccagcaacgggcgaggaggtttagg
gctgctaaagatgctgcagatgcggaagcagaagcagagaagctgaaggatgagtttgaa
tcgcatcttgagaaattttgtcatcaacaaacgagcaaaatggattctaatgtcatcacg
cctggaactttgttcatggattgtttgtcgtctgctcttcggtactatatttgtttgaga
ttgaacaaggatcctggatggcggagtgttaaggtcattctttctgatgctagtgtgccg
ggtgagggtgaacacaaaatagcagcatatattcgctcccagagaaatcttcctggtttt
gatccaaacacaagacattgtttgtatggtttggatgctgacttgataatgcttgctcta
gcaacacacgagatacatttttctattttaagagaggatgtacgtgttgcaaaatttgat
caaagaaattcaaaatctgtttacaaaaagaagtgttcaaataaaggagaagaaggaaaa
gagtccaatcatgacattggttatgaagattcaagaaagaagttccagtttctcaatata
tggattttaagagactatttgcagcacgaattgaaagtatttggtgcaaatatgaagatt
gacttggagcgtttgattgatgatttcgttttcatttgtttgtttgttggaaatgacttt
cttccccatgttccttctctcgaaatttcagagggagcaattgatcttcttacgatggtc
tataaaaaggaatttgctgcaatgggtggctatttaacaaattcttttgaggtgaatcta
gagcgagttgaacactttcttcaagttgttggatctcatgaaagtgccatctttcgaaag
cgggtccagttacagaaagaaagaaatagtcattccaagggtcctaattccatggcaatt
gagccacaagtagaatgtgcatggatggagagctttgagaggtcttcaaattcatttggc
agaaatatatcagatagaatatcatgtgccactgcagaacattttcaggtagggcaggga
gaagaagattggaaggaaaagtactactcagagaagtttgaagtcaactctaaagatgaa
tgccaaagagtgaagcaaaatacagtaaaacactatgtggaaggtatctgctgggtcatg
cactattattatcaaggtgtctgttcatggcaatggttttatccacatcactatgctcca
ttcgcatctgattttgttggtttgaagaacttagagatccagtttaaaattggtgttccg
ttcaagccatttgatcagctcatgggtgtactacctgctgcaagtgcacacgcactgcct
tcatcttacaaggatttgatgatcaatccgtcttcttcaataattgatttttatccagca
gattttgagcttgatttgaatggcaagcgtttctcttggcaggctgtatgtaaactacca
tttgttgatgaatcacgacttcttgcagaaataaaaagagttgaagacacgctaacggag
gaggaaaaggaaagaaacagctggactatggatgtgctctttgttcatttctcgcatcca
ttaacatcaaagatcctatccttttatcagaggaagaaggataatccaaaactgggaaag
gccaaactcaaaaagagaattgatccggaaatcagtgatgggatgaacggactcatttat
atttcagataagacaatgttttcttttgagatttattcacctgtcgagggcatggaagca
ataactcaaaacaaaaccatatccacgtatttcaaagctccttctatccaaactcatatt
gccagactaccagatggcatcaccttacccaataagtccatcagcaaaaaacatattcca
ccagtgccaggactgtggcatgagacattgatatcaaagaggcaagcgcatctcaatagg
cctattcctcatgcaattgagggtcatcttctattgaaattggctcacaaactcgtaaca
aattactacggcgaaaagatgaagcaagattcggtaagactcgacaagaaagcatttgat
gataaatgcaacaagaagctcaaggagctaacaaccactatcagcattcttgggaagaga
aaatgcaggggccaagaacataaccaaaacaccaacaaaaggaggcatcacaaaactaag
ggaacaaatagacgcaaacgtagaaggaactag
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