Zingiber officinale (ginger): 121994614
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Entry
121994614 CDS
T08725
Name
(RefSeq) transcription factor PIF3-like
KO
K12126
phytochrome-interacting factor 3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04075
Plant hormone signal transduction
zof04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
121994614
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
121994614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
121994614
Transcription factors [BR:
zof03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
121994614
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GFIT
Motif
Pfam:
HLH
bHLH_LHW
bHLH_SAC51
FapA
Motif
Other DBs
NCBI-GeneID:
121994614
NCBI-ProteinID:
XP_042404524
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Position
6A:complement(11780580..11782922)
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AA seq
605 aa
AA seq
DB search
MLRHKQEIIQPRMTNDSSDPFAISDNEFADLLWENGQIVIQSQSSRAPKSSFPSTAFCYG
TVQAKPTREIDPKFSQSRSDGHDYCTTKHSANRGVNTQEDDTVPWISFPVEEVLTSETLQ
PQNDYCAEFLNEFLAFDMDPLSAPKCSIAATGQTDKFSQEVRRSNNTDRSHATKAPRWNW
ASGRMKATHPQQNHASALNSKSTVVDSCGSGIDVAQKLHCRDVMDRRLQNQGLKSSKQLQ
QPTISGLMNFSHFARPAALAKVTHQSAVGWKRIDKASPPPNSNPVRLTPIESVSSTKDAN
KVSGQSGSDPHKLVLDSAMEDLQGGGSVELSNKIRAEDALRKTIQNCTKMPDNLPSSNVS
TSMVLCGHDIEAPEAALPYMCSVKITGTASNEPKHGEKRKECDEEELEYLSHSEDLQEKS
ADIRKPPNGSNAQTKRSHAAEVHNLSERRRRNRINEKMRALQELIPNCNKVDKASMLEEA
IEYLKTLQMQIQAVYATDDVNSCNATHAYANAAQFLTSKPKNEHKHRISPGLSSAPNSTN
ACTAISMRSKFKTIRPGIPVLMPQPPQFSTLAGPSMSIDSAPEVHAQTAIADTEEHERQN
LNVGP
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgttgaggcataagcaagaaatcatacaaccaaggatgacaaatgattcatctgacccg
ttcgctatatctgataatgagtttgctgatctattatgggagaatggccaaattgtgata
cagagccagtctagtagggctccaaagagctcctttcctagcactgccttctgttatggc
acagttcaagcaaaacccaccagggaaatagatccaaaattctctcagtcgcgatctgat
ggacatgattattgcacaacaaagcattctgcgaacaggggagtgaatactcaagaagat
gatactgtcccatggattagttttccagttgaggaagtcttgacaagtgagactctccag
ccccagaatgattattgtgctgagttcttgaatgagttcttagcatttgatatggatcct
ctttccgcacccaagtgtagtattgctgcaacaggtcaaactgacaagttcagtcaagaa
gttaggagatcaaacaacacggacaggagccatgctactaaagcacctagatggaattgg
gcgtcgggcagaatgaaggccacccatccacagcaaaatcatgcttcagctcttaattca
aagtcgactgtagttgatagctgtggtagtggtatcgacgtagctcaaaaactgcattgt
agggatgtgatggacagaaggttgcaaaatcagggattgaaaagttccaagcaactgcag
caaccaaccatatctggtctgatgaacttctcccattttgcaagacctgctgcactagcc
aaggttacacatcaaagtgctgttggatggaaaagaattgacaaggcctcccctcctcca
aacagcaatccagtcagattgacacctattgaaagtgttagcagtactaaggatgctaac
aaggtatcagggcagtctggctcagatccacacaagttggtattggattcagctatggaa
gatcttcaaggaggaggctcagttgagttgtctaataaaattcgtgcagaagatgctttg
aggaagactattcagaattgcactaaaatgccagataatcttccaagctcaaatgtgtca
acaagtatggtcttgtgtggacatgacatagaagctcctgaagcagcattgccttatatg
tgttcagtgaaaataactggaactgcatcgaatgaaccaaaacatggtgaaaagagaaag
gaatgtgatgaagaagagcttgagtatctcagccacagcgaagatctccaagagaaatca
gcagacataaggaaaccaccaaacggaagcaatgcacaaacaaagagaagccatgctgca
gaagttcacaatttatcagaaagacggaggaggaacaggattaatgagaaaatgcgtgca
ctgcaagagcttatacccaactgcaacaaggtggacaaagcttcaatgcttgaagaggcc
attgagtatctcaaaacacttcagatgcaaattcaggctgtatatgccaccgatgatgtt
aactcctgcaatgcaacacatgcatacgccaacgctgcccaatttctcaccagcaaacct
aagaatgagcacaagcacagaattagtcctgggttgtccagtgctcccaattccaccaat
gcatgtaccgcaatttccatgcgctccaagttcaagacaatcaggccagggattccagtt
ttgatgccacagcctcctcaatttagtacattggcagggccttctatgagtatagactct
gcaccagaggtacatgcacaaactgctatagcagatactgaagagcatgagcgtcagaac
ttgaatgtaggcccataa
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