Zingiber officinale (ginger): 121996663
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Entry
121996663 CDS
T08725
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
121996663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121996663
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
121996663
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
121996663
NCBI-ProteinID:
XP_042406636
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Position
6A:78154138..78164373
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AA seq
860 aa
AA seq
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MGIPAFYRWLVDRYPLSVVQVCEETAKMVNGVRIPVDTTRPNPNGVEFDNLYLDMNGIVH
PCFHPEDRPAPKSYDEVYKAIFAYIDHIFSMIRPRKLLYMAVDGVAPRAKMNQQRARRFR
AAKDAADAEAEAEKLKDEFESHLEKFCHQQTSKMDSNVITPGTLFMDCLSSALRYYICLR
LNKDPGWRSVKVILSDASVPGEGEHKIAAYIRSQRNLPGFDPNTRHCLYGLDADLIMLAL
ATHEIHFSILREDVRVAKFDQRNSKSVYKKKCSNKGEEGKESNHDIGYEDSRKKFQFLNI
WILRDYLQHELKVFGANMKIDLERLIDDFVFICLFVGNDFLPHVPSLEISEGAIDLLMMV
YKKEFAAMGGYLTNSFEVNLERVEHFLQVVGSHESAIFRKRVQLQKERNSHSKGPNSMAI
EPQVECAWMESFERSSNSFGRNISDRISCATAEHFQVGQGEEDWKEKYYSEKFEVNSKDE
CQRVKQNTVKHYVEGICWVMHYYYQGVCSWQWFYPHHYAPFASDFVGLKNLEIQFKIGVP
FKPFDQLMGVLPAASAHALPSSYKDLMINPSSSIIDFYPADFELDLNGKRFSWQAVCKLP
FVDESRLLAEIKRVEDTLTEEEKQRNSWTMDALFVHFSHPLASKILSFYQRKKDNPKLGK
AKLKKRIDPEISNGMNGLIYISDKTMFSFEIYSPVEGMEAITQNKTISTYFKAPSIQTHI
ARLPDGITLPNKSISKKHIPPVPGLWHETLISKRQAHLNRPIPHAIEGHLLLKLAHKLVT
NYYDEKMKQDSVRLDKKAFDDKCNKKPKELTTTTAGESDDNTISILGKRKCRSQEHNQNT
NKRRRHHKTKGTNRRKRRRN
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgggaattccggctttttaccggtggctggtcgaccgttaccccctttccgtggtgcag
gtctgcgaagaaactgccaaaatggtcaatggggtccggatcccagtagacactaccagg
ccgaaccctaacggcgtcgagttcgacaacctctacctggatatgaacggcatcgtccac
ccttgcttccatccggaagaccggcctgctcccaagtcgtatgatgaagtctacaaagct
atttttgcttacattgatcacattttctccatgattcgtccccggaagctcctgtacatg
gcagttgatggagtggcacccagagcaaagatgaaccagcaacgggcgaggaggtttagg
gctgctaaagatgctgcagatgcggaagcagaagcagagaagctgaaggatgagtttgaa
tcacatcttgagaaattttgtcatcaacaaacgagcaaaatggattctaatgtcatcacg
cctggaactttgttcatggattgtttgtcatctgctcttcggtactatatttgtttgaga
ttgaacaaggatcctggatggcggagtgttaaggtcattctttctgatgctagtgtgccg
ggtgagggtgaacacaaaatagcagcatatattcgctcccagagaaatcttcctggtttt
gatccaaacacaagacattgtttgtatggtttggatgctgacttgataatgcttgctcta
gcaacacacgagatacatttttctattttaagagaggatgtacgtgttgcaaaatttgat
caaagaaattcaaaatctgtttacaaaaagaagtgttcaaataaaggagaagaaggaaaa
gagtccaatcatgacattggttatgaagattcaagaaagaagttccagtttctcaatata
tggattttaagagactatttgcagcacgaattgaaagtatttggtgcaaatatgaagatt
gacttggagcgtttgattgatgatttcgttttcatttgtttgtttgttggaaatgacttt
cttccccatgttccttctctcgaaatttcagagggagcaattgatcttcttatgatggtc
tataaaaaggaatttgctgcaatgggtggctatttaacaaattcttttgaggtgaatcta
gagcgagttgaacactttcttcaagttgttggatctcatgaaagcgccatctttcgaaag
cgggtccagttacagaaagaaagaaatagtcattccaagggtcctaattccatggcaatt
gagccacaagtagaatgtgcatggatggagagctttgagaggtcttcaaattcatttggc
agaaatatatcagatagaatatcatgtgccactgcagaacattttcaggtagggcaggga
gaagaagattggaaggaaaagtactactcagagaagtttgaagtcaactctaaagatgaa
tgccaaagagtgaagcaaaatacagtaaaacactatgtggaaggtatctgctgggtcatg
cactattattatcaaggtgtctgttcatggcaatggttttatccacatcactatgctcca
ttcgcatctgattttgttggtttgaagaacttagagatccagtttaaaattggtgttccg
ttcaagccatttgatcagctcatgggtgtactacctgctgcaagtgcacacgcactgcct
tcatcttacaaggatttgatgatcaatccgtcttcttcaataattgatttttatccagca
gattttgagcttgatttgaatggcaagcgtttctcttggcaggctgtatgtaaactacca
tttgttgatgaatcacgacttcttgcagaaataaaaagagttgaagacacgctaacggag
gaggaaaagcaaagaaacagctggactatggatgcactctttgttcatttctcgcatcca
ttagcatcaaagatcctatccttttatcagaggaagaaggataatccaaaactgggaaag
gccaaactcaaaaagagaattgatcctgaaatcagtaatgggatgaacggactcatttat
atttcagataagacaatgttttcttttgagatttattcacctgtcgagggcatggaagca
ataactcaaaacaaaaccatatccacgtatttcaaagctccttctatccaaactcatatt
gccagactaccagatggcatcacattacccaataagtccatcagcaaaaaacatattcca
ccagtgccaggactgtggcatgagacattgatatcgaagaggcaagcgcatctcaatagg
cctattcctcatgcaattgaggggcatcttctattgaaattggctcacaaactcgtaaca
aattactacgacgaaaagatgaagcaagattcggtaagactcgacaagaaagcatttgat
gataaatgcaacaagaagcccaaggagctaacaaccaccaccgccggggagagcgatgac
aacactatcagcattctcgggaagagaaaatgcaggagccaagaacataaccaaaacact
aacaaaaggaggcggcatcacaaaactaagggaacaaatagacgcaagcgaagaaggaac
tag
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