Zingiber officinale (ginger): 121998533
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Entry
121998533 CDS
T08725
Name
(RefSeq) small nuclear ribonucleoprotein-associated protein B-like
KO
K11086
small nuclear ribonucleoprotein B and B'
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121998533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121998533
03041 Spliceosome [BR:
zof03041
]
121998533
03032 DNA replication proteins [BR:
zof03032
]
121998533
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
121998533
Spliceosome [BR:
zof03041
]
Complex A
U1 snRNP components
Sm proteins
121998533
U2 snRNP components
121998533
Complex B
U1 snRNP components
121998533
U4/U6.U5 tri-snRNP components
121998533
Complex C
U2 snRNP components
121998533
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
121998533
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
121998533
NCBI-ProteinID:
XP_042409429
LinkDB
All DBs
Position
6A:complement(146058334..146061149)
Genome browser
AA seq
275 aa
AA seq
DB search
MSMSKGSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGAAKK
ADGDREDRRTLGLVLLRGEEVVSMTVEGPPPPDESRAKANAAAGLAGPGVGRAAGRGIPT
APLIQAQPGLAGPVRGVGGPAPGMMQPQISRPSIPQLSAPPIAYPQVLRPPGPGQVPGFP
GQPQAVGQRPPGVMPMQFAARPGGPPPPFPMPPPQLGQRPPFPMPPPGMRPGMPAPLPPR
PGMPPPPGGQVPMFAPPRPGMPPPPPPNQQQGPSQ
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgtcgaagggttcgaagatgcttcagtacatcaactacaggatgcgcgttacc
atccaggatggtcgccagctcgtcggcaagttcatggcgttcgaccgtcacatgaacctt
gtcctcggcgactgcgaggagttccggaagctccctcccgccaagggtgccgccaagaag
gccgatggagaccgagaggaccgccgcaccctcggcctagttctcctccgcggcgaggag
gtagtttccatgaccgtcgagggccccccacctcccgacgagtcccgcgcgaaggccaac
gccgcggctggcctcgctggacctggggtaggccgcgccgccggccgtggcatccccacg
gctccccttatccaggcacagcctggtctcgctggacccgtccgtggcgttggcgggcca
gctcctgggatgatgcagcctcagatctcgcgaccttctattcctcagctatctgcgcca
ccgatcgcgtatccccaagttctccgtccgcctggcccggggcaggttcctggtttccca
ggccagccacaagcagttggccaacgcccacctggtgtcatgcccatgcagtttgctgct
aggccaggaggtccaccccctccattccctatgcccccgcctcaacttggtcagaggcct
ccattcccaatgcctccaccgggtatgcggcctggtatgcctgctcctcttcccccaagg
ccaggtatgccgccaccacctggtggacaagtccctatgtttgctccgccaagacctgga
atgccgccgccaccaccaccgaaccaacagcaaggcccaagccagtag
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integrated database retrieval system
