Zingiber officinale (ginger): 122004643
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Entry
122004643 CDS
T08725
Name
(RefSeq) transcription factor PIF1-like
KO
K16189
phytochrome-interacting factor
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122004643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
122004643
Transcription factors [BR:
zof03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
122004643
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Ortholog
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Motif
Pfam:
HLH
bHLH_SAC51
bHLH_IRO3
bHLH_LHW
Tom22
Rib_mS39_PPR
Motif
Other DBs
NCBI-GeneID:
122004643
NCBI-ProteinID:
XP_042415430
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All DBs
Position
7B:complement(105551702..105553515)
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AA seq
448 aa
AA seq
DB search
MSQFVPDWNLEDGFTNSEDVHILPMTSQKNPMGRDSEIAELLWRDGHMVVGSQTDQEGSG
RGSEFQVIRRHELSTSLIQDEETASWIQNSLDHSMGKEFCSEFFSEMAGSNSKSLDKLNS
NAIVGNARCVTANGFEFTSYKQQDLKRSVSRVENCNALNFLHFSKSLRGKSDEEGSSGST
KVQRDESSTPMMKIGSSIHGSNQIPNDVIGNQCKQKQASETAILSTLPTSVFSTRSIGVQ
GESHPCLKRKQRDTDYSKDQSEETEESLNAKKQSRNRAAEVHNLSERRRRERINERMKAL
QELLPHCNKTDKASMLEEAIEYLKSLQLQVQMMWMGSGMAQMMFPGEQQYISGMEMGMGM
AHASVPSMHHAVHLPSLPVVGHQSVNQAFLCPTASFHAVNLGDTTQSAHLQGSQVSFDGF
RLHSQARDESVCLWIEGGAGESANNSTE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgagccagtttgttcctgattggaatttagaagatggcttcacaaatagtgaggatgtt
catattcttccaatgacaagtcaaaagaacccaatggggcgagacagcgagatcgcagag
ttgctatggcgagatgggcatatggttgtgggtagccaaactgatcaggaaggttctggt
agaggtagtgagtttcaagtgatacgacgacatgagctatccaccagcttgattcaggat
gaagaaactgcatcgtggattcaaaactctcttgatcattcgatgggaaaagaattctgt
tcggagttcttttctgaaatggcaggtagcaactcaaaaagcttagacaagttgaatagc
aatgccatcgttgggaatgcaagatgtgtaactgccaacggttttgaattcacctcctac
aagcaacaagatttgaaacgatcagtttcccgcgtagaaaattgtaatgctctaaacttc
ttacatttttcgaagtcattgagaggcaaatcggatgaggaaggatctagtggctcgact
aaggtccagcgagacgagtcttcgaccccaatgatgaaaattggatcaagcattcatgga
agtaatcaaattcccaacgatgtcatcggtaatcaatgcaagcaaaaacaagcaagtgaa
actgctattctttcaacattaccgacttcggtttttagtactagaagcataggagtccag
ggtgaaagtcatccatgcctaaagaggaagcaaagggatactgattattcaaaagatcaa
agtgaggagacagaggagtcactgaatgcaaagaagcaaagcagaaaccgcgcagctgaa
gtccacaatctatctgagaggagaagacgagagaggataaacgaaagaatgaaggcactc
caagaactactacctcattgcaataaaacagacaaagcatcaatgcttgaagaggcaatt
gaatacttgaagtcactccaactgcaagtgcagatgatgtggatgggaagtggcatggca
cagatgatgtttcccggcgagcaacaatatatttccggcatggagatggggatggggatg
gctcatgcttcagttccttcaatgcatcatgcagttcatctaccaagtcttccagttgtt
ggtcatcaatctgtaaaccaggcatttttatgtcctactgcatcttttcatgcagtaaat
ctcggagacacaacacaaagtgcccatttgcagggatcgcaggtctcattcgatggcttt
cgattgcattcgcaggctcgagatgaatctgtatgcctttggatcgaaggtggagcagga
gaatccgcgaacaacagcaccgagtag
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