Zingiber officinale (ginger): 122012245
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Entry
122012245 CDS
T08725
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
KO
K16189
phytochrome-interacting factor 4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122012245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
122012245
Transcription factors [BR:
zof03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
122012245
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Rib_mS39_PPR
Motif
Other DBs
NCBI-GeneID:
122012245
NCBI-ProteinID:
XP_042424658
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Position
8A:complement(8237393..8240652)
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AA seq
531 aa
AA seq
DB search
MNQYVPGWTVADDSGCLTDLLPMSSQKKPMGPENELVELLWRNGHVVMHSQTHRRAPAYS
EFKQPQRHEQSLGNSSNLIQEPESASWFQYPFDDPFEREFCSEFFPEIVTTTETDKISKE
LMEEEEEHRFLKFGSTNDSNNDFAASDAKQTTPSSQEHVMPPPKSHCLGSTPQSSCLDNT
SLPNFSQLSKMKANIGSSSCQLGHKGSGSNLKAGESSMMTVGSSNCGSNQVQAQTDPRNT
LSNDGAGTWAGLKEDTGMRLLSDRLQSKPHEAALTSSSGGSGCSFGRAQKKASNQSHKRK
AREVEDSVCQSEDAEYESIEEKKPTQRPMAKRRSRAAEVHNLSERKRRDRINEKMKALQE
LIPHCNKTDKASMLDEAIEYLKSLQLQVQMVWMGSGMASMMFPGVQQYISGMGMGMGHPP
IPTLPTAVQLPRVPLVNQTVPPASSSNQSSIFPSPALGAVNFPSQMQNIHLPESYARYLS
MHMMPPPQAANYCTYVSHLVQMNKSAAAPNSSSPASAGGAPGASIRNNRSG
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaatatgttcctggttggaccgtggcagatgactctggttgtctgacagatctt
cttcccatgtcgagtcaaaagaaaccaatggggccggagaatgagctcgttgagttgttg
tggagaaatgggcatgttgttatgcacagccaaacacaccgaagggcgcctgcctacagt
gaattcaaacagcctcagagacatgaacagtccctcggcaactccagcaacttgatccaa
gagcctgaatctgcgtcgtggttccagtacccctttgacgacccgtttgaaagggaattc
tgctctgagttcttccctgaaattgtgacaactaccgaaaccgataaaataagcaaggag
ttgatggaggaggaggaggaacacaggttcctgaaattcggttccaccaatgatagcaac
aatgattttgcagcatctgatgctaagcagaccacccctagctctcaagaacatgtcatg
ccgcctccgaagtcacattgtttgggctctacacctcagtcttcctgcttagataacaca
agccttccaaacttttctcaattgtcgaagatgaaggccaatataggatcctcaagctgt
caactgggacacaaaggatcaggaagcaacttgaaggcgggcgagtcttcgatgatgact
gttggatcaagcaactgcggaagcaatcaagtccaagcccagacggatccaaggaatact
ttaagcaatgatggagctggaacttgggcaggacttaaagaggacactggaatgaggttg
ttgtcggacagacttcaatcgaaaccgcatgaggctgctctaacatcatcatcaggtggt
tctggctgtagttttggaagagcacagaaaaaagcgagtaaccaaagccacaagaggaag
gccagggaggtggaagattctgtgtgtcaaagcgaggacgctgagtatgaatcaattgag
gaaaagaagccaactcaaagaccgatggctaaacgcagaagtcgtgctgcagaagtccac
aatctctcagagaggaaaagaagagacaggattaatgaaaaaatgaaggccctgcaggag
ctcatacctcattgcaataagacagataaagcttcgatgctagacgaagcaattgaatac
ctgaaatcacttcaactgcaagttcagatggtgtggatggggagtggcatggcatcaatg
atgtttcctggagttcaacaatacatttcaggaatgggaatgggaatgggtcaccctccc
attccgacgcttcctactgcagttcaattgccaagagttccattagtcaatcaaacagta
cccccagcttccagctcaaatcagagctccatatttccctccccagccttgggtgcagta
aactttccgagccagatgcagaatattcatcttcctgaatcatatgccagatatcttagc
atgcatatgatgccaccacctcaggcggcaaactattgtacatatgtatctcacttggta
cagatgaacaagtctgcagcagcacctaatagcagttcaccagccagtgctggaggagct
cctggtgcaagtatacggaacaacagatctggttga
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