Zingiber officinale (ginger): 122027054
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Entry
122027054 CDS
T08725
Name
(RefSeq) ABC transporter I family member 20-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122027054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122027054
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122027054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
SMC_N
Arf
AAA_23
ORC-CDC6-like
AAA
AAA_25
AAA_28
nSTAND3
Zeta_toxin
AAA_30
AAA_7
Motif
Other DBs
NCBI-GeneID:
122027054
NCBI-ProteinID:
XP_042441791
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Position
10A:32726441..32736669
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AA seq
337 aa
AA seq
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MADDCPAGSASGAGGVPVVEIKNLRFTYPGIDGHPPPGSTPLIDEFSLSLAAGERCLLVG
SNGAGKTTILKILGGKHMVEPEMVQIFGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFE
VSIQMDISAEKMINGVSGIEPNRRDELIKVLDIDLSWRMHKASDGQRRRVQICMGLLKPF
KVLLLDEITVDLDVLARADLLRYLKKECEERGATIIYATHIFDGLEDWPTHVVYVAHGKL
QLALPLEKVKQMSNLSLMRTVESWLRKERDEDRRRRKERKESGLPEFEKPVKGSRVTGDP
ARIAIRVMNNGWAAGRLNSTVAGEENFFLSSNRVLRQ
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgattgccccgccggctcagcttctggcgctggaggtgtccctgtggtggag
attaagaacctccgcttcacgtatcctggaatcgacggccacccgcctccgggatccaca
cccctgatcgacgaattctcactatcgcttgcagctggcgaacggtgccttcttgtggga
tccaatggagccggaaagactacgatactgaagatattgggtgggaagcacatggtggag
cctgagatggttcagatcttcgggaggtcggccttccatgacaccgctctcacctcttct
ggcgatctttcttacttgggtggagagtggaggagagaagttgcttttgctggttttgag
gtgtcgattcaaatggatatttctgctgagaagatgataaatggtgtatctggcattgag
cccaatagaagagatgaactgattaaagttttagacattgatttatcatggagaatgcac
aaagcatctgatggtcaaaggagacgcgttcaaatttgcatgggtcttcttaaaccattt
aaggttcttcttcttgatgaaataacagttgacttagatgtccttgcaagagccgacctt
ttaagatatctcaagaaggaatgtgaagaacgaggtgccaccattatatatgcaacacac
atttttgatggtctagaggactggccgacacatgttgtatatgtggctcatggaaaattg
caattagcactccctttggagaaagtcaagcagatgagtaatttatcattaatgcgaaca
gtggagagttggttgaggaaggaaagggatgaagacaggaggagaagaaaggagcgaaag
gaaagtgggcttccagaatttgaaaaaccagtcaaggggtcgagagtaacaggtgatcct
gcccggattgcgatccgagtgatgaacaacggctgggccgctggaagacttaattcaact
gtcgcgggggaggagaatttctttttgagttccaacagggtccttagacaataa
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