Zingiber officinale (ginger): 122038126
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Entry
122038126 CDS
T08725
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122038126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122038126
Spliceosome [BR:
zof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122038126
Complex C
U5 SnRNP specific factors
122038126
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
MMR_HSR1
EFL1
EFG_III
Roc
Dynamin_N
EF-G_D2
Septin
Ras
Motif
Other DBs
NCBI-GeneID:
122038126
NCBI-ProteinID:
XP_042453669
LinkDB
All DBs
Position
1A:complement(156325022..156330329)
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AA seq
998 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDHGSDDDEDASLGDKSADGSAHSDDDEPGSSSPGPASNGWI
TTSGGPYDMDVDAAANQIVLAEDKKYYPTAEEVYGEGVETLVMDEDEQPLEQPIIKPVRT
LKFEVGVKDSSTYVSTEFLLGLASNPSLVRNVALVGHLQHGKTVFMDMLVEQTHEISTFD
SQSERHMRYTDTRIDEQERKISIKSVPMSLVLEDSNAKSYLCNIMDTPGHVNFSDEMTAA
LHLADGAVLVVDAAEGVMVNTERAIRHAIQERMPIVVVINKVDRLVTELKLPPTDAYFKL
RHTLETINDLISSCSTTVGGTQMVDPVAGNVCFASASAGWSFTLQSFAKLYVKLHGIPFD
SSKFASRLWGDLYYHPDERVFRKKPPMGGGERSFVQFILEPLYKIYSQVIGEHKKSVEST
LAELGVTLSNAAYKMNVRPLLRLACSSVFGSATGFTDMLVQHIPSARDAAMKKVEHIYTG
PLDSYIAEAMKKCDPFGPLMINVTKLYPKSDCSVFDAFGRVYSGTIQTGQTLRVLGEGYS
PEDEEDMTVKEVTKLWVYQARYRIPISKALAGSWVLIEGVDASIMKTATLCPLDMDEDVY
IFRPLRFNTLSVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGEI
YLDSIMKDLRELYSEVEVKVADPVVTFCETVVETSSMKCFAETPNKRNKITMVAEPLEKG
LAEDIENGVVNIDARQRDISDFFQKRYDWDLLSARSIWAFGPDKQGPNILLDDTLPSEVD
KNLLNSVRDSIVQGFQWGAREGPLCDEPIRNVKFKILNASIAPEPLHRGGGQIIPTARRV
VYSAFLMANPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTQDVPKPGTPVYIVKAFL
PVIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAQIQHLAREFMV
KTRRRKGMSEDVSINKFFDEAMVVELAQQAADMHLQIM
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggacgatagcctctacgacgaattcggcaactacatcggacctgagatcgagtccgac
catggttccgacgacgacgaggacgcctccctcggagataaatctgcagacgggtctgcc
cactcagacgacgacgagcctggctcatcctctccaggtcccgcctccaatggttggatc
accacttccggcggaccatacgacatggacgtcgacgccgctgccaaccagatcgttctg
gccgaggacaagaagtactaccctacagctgaagaagtctacggtgagggtgtggagacc
ctcgtgatggacgaggacgagcagcctctggagcagcccattatcaaacccgtccgcacc
ctcaagttcgaggtcggggtcaaggattcctccacctacgtttccaccgagtttctgcta
ggtcttgcctccaatccttcgttggtccgcaatgtggcgctcgtgggacacctccagcac
gggaaaacggttttcatggacatgcttgttgaacagacccacgagatctccacttttgat
tctcaaagcgagcggcatatgagatatactgacacgaggatcgatgagcaggagaggaag
atatcgatcaagtctgtgccaatgtctctcgtgcttgaggatagcaacgcgaagtcgtat
ctttgtaacataatggacactcctggccacgtcaatttctcagatgagatgactgctgca
cttcatttagcagacggagccgtgttggttgtggatgctgcagaaggtgttatggtgaat
actgaaagagctataaggcatgcaatccaagaaagaatgccaatagtggtggttataaat
aaagttgatagacttgtaacagagcttaagctgcctcctactgatgcatactttaagctg
aggcacacattggaaactatcaatgatctgatatcctcttgctccacaacagttggaggt
acccaaatggttgatcctgttgctggaaatgtttgctttgctagtgcaagtgctggctgg
tctttcacattgcaatcatttgctaagctatatgtcaagcttcatggcataccatttgac
tcctcgaaatttgcatcacgcttgtggggagacctatattatcaccctgacgaaagagta
ttccgaaagaaacctcctatgggtggaggagaaagatcatttgttcaattcattcttgaa
ccattgtacaaaatctatagtcaagtcattggagaacataagaagagtgttgagtcaact
cttgctgaacttggagttacactgagtaatgcagcttataagatgaacgtgagacctttg
ttgaggttggcttgtagttctgtctttggatcagccactggtttcactgatatgcttgtg
cagcacattccctctgctagggatgctgcaatgaagaaggtggagcacatatatacaggg
cctctggactcatatattgctgaagctatgaaaaaatgtgatccatttggtcctcttatg
atcaatgtcacaaaactttaccctaaatctgattgtagtgtgtttgatgcttttggtcgt
gtttatagtggtactatacagactggtcaaactttgcgagtgcttggagaaggatattcg
cctgaagatgaagaagatatgactgttaaagaagttaccaagttgtgggtatatcaggct
cggtaccggattccgatcagtaaagcccttgctggctcttgggttctaattgaaggtgtt
gatgcttcaataatgaagacagcaactctgtgccctttggatatggatgaagatgtgtac
atttttaggccgcttcgcttcaatacattatcagttgtgaagactgcaactgaaccattg
aacccaagtgagcttcctaagatggtggagggcctaagaaaaattagtaagagttatcct
ttagctattacaaaggttgaagagtcaggggagcacactatcctggggacaggagagatc
tatcttgattcgattatgaaagacttgagggaactttattctgaagttgaagttaaggtt
gcagatccagttgttactttttgcgagacagtggttgaaacatcgtcaatgaaatgtttt
gcagaaacacctaacaaaaggaacaaaattaccatggttgcagagccattggagaagggg
ttagcagaagatattgagaatggtgttgttaatattgatgcacgccagagggatattagc
gatttcttccagaagcgctatgactgggatttgctttcagcaaggtctatttgggcattt
ggtccagacaaacagggacctaatatcttgttagatgacactcttccaagtgaagttgac
aagaatctgttgaattctgtcagagattccattgttcagggtttccaatggggtgcccga
gaaggacctctttgcgatgaacccattcgcaatgtaaaattcaaaatattaaatgcatca
atagctccagagcctttgcatcgaggaggaggacagattattcccactgcacggagagtg
gtgtattcagcttttcttatggcaaatcctcggctgatggaacctgtttactatgttgag
atacaaaccccaatagattgtgtctcagctatttacactgtgctgtctcgaaggcgagga
catgtaacccaagatgtacctaagcctggcacaccagtgtatatcgtaaaggcctttttg
cctgtgatcgagtcatttggctttgagacggacttgagataccatactcaagggcaagct
ttttgtctctcagtttttgatcattgggctatcgttcctggtgatccattggataagagt
attgttctacgaccacttgaaccagcccaaatacagcaccttgctcgtgaattcatggtc
aagactagacgcagaaagggtatgagcgaagatgtgagcattaacaagttctttgacgaa
gccatggttgtggagctcgcacagcaggcagctgacatgcatctgcaaattatgtag
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