Zingiber officinale (ginger): 122052315
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Entry
122052315 CDS
T08725
Name
(RefSeq) RING-box protein 1a-like
KO
K03868
E3 ubiquitin-protein ligase RBX1 [EC:
2.3.2.32
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03420
Nucleotide excision repair
zof04120
Ubiquitin mediated proteolysis
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122052315
04120 Ubiquitin mediated proteolysis
122052315
09124 Replication and repair
03420 Nucleotide excision repair
122052315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122052315
03400 DNA repair and recombination proteins [BR:
zof03400
]
122052315
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.32 cullin-RING-type E3 NEDD8 transferase
122052315
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
122052315
Multi subunit type E3
SCF complex
Ring finger protein
122052315
Cul2 complex
122052315
Cul3 complex
122052315
Cul4 complex
122052315
Cul7 complex
122052315
Cul8 complex
122052315
Cul9 complex
122052315
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
122052315
TCR (transcription coupled repair) factors
Cul4-CSA complex
122052315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-rbx1
zf-ANAPC11
zf-RING_2
zf-C3HC4
zf-C3HC4_2
zf-RING_11
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
122052315
NCBI-ProteinID:
XP_042469720
LinkDB
All DBs
Position
3A:complement(115961080..115974049)
Genome browser
AA seq
125 aa
AA seq
DB search
MASLDTDVDMVPAGEGSSSGATGSSSLTPSTSSKKPKRFEIKKWNAVALWAWDIVVDNCA
ICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEF
QKYGH
NT seq
378 nt
NT seq
+upstream
nt +downstream
nt
atggcttccctcgacaccgacgtcgacatggttccggcaggcgaggggtcgagcagcggg
gctaccgggtcgtcctccttgaccccttccacttcctcgaagaagccgaaaaggttcgag
attaaaaagtggaacgctgtcgccctctgggcctgggatatcgtggtggacaactgtgct
atctgtaggaaccacatcatggatctttgcatcgagtgtcaggctaatcaggcgagtgcg
accagtgaggagtgcacagtggcttggggggtctgcaatcatgctttccatttccattgc
atcagccgatggctcaagactcgtcaagtttgccccctcgacaatagcgagtgggagttc
cagaaatatgggcactag
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