Zingiber officinale (ginger): 122053354
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Entry
122053354 CDS
T08725
Name
(RefSeq) ABC transporter I family member 19-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122053354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122053354
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122053354
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
ORC-CDC6-like
AAA_28
AAA
SMC_N
AAA_15
NACHT
AAA_5
SRP54
PduV-EutP
AAA_22
AAA_23
AAA_18
AAA_30
AAA_24
AAA_25
AAA_33
Arf
AAA_16
AAA_14
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
122053354
NCBI-ProteinID:
XP_042471308
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Position
3A:164484828..164488809
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AA seq
287 aa
AA seq
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MIGGGIEVSGLHFAYEGRSPLFARFNLNVSPGSRCLLIGANGSGKTTLLKILAGKHMVGG
RDVVRVLNASAFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGVDP
VRREKLIDLLDIDLQWRMHKVSDGQRRRVQICMGLLYPYKVLLLDEVTVDLDVVTRMDLL
DFFKEECELRGVIIVYATHIFDGLESWATHLAYIQDGELLRSGKMSDIVELKNADNLLSV
VESWLRSEVKLPKKESTAPINSTTPASRPSPFDSSPFRSSRHMAYYR
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgatcggcggcggcatcgaggtgtcaggcctccacttcgcctacgaaggccgatcgccg
cttttcgctaggtttaacctgaacgtctctcccggttcccgatgcctcctcatcggcgct
aatggatctggaaaaactacccttttgaagattttagcagggaagcatatggttggggga
agggatgtggtgcgagttcttaatgcctcggctttccatgacacgcaacttgtttgtagt
ggtgatctttcttatcttggtggatcttggagcaaaactgttggatcagctggagagatt
ccactccagggcgacttttctgctgaacacatgatttttggagttgaaggtgtcgatcct
gttaggagagagaaattgattgatcttcttgacattgatcttcagtggagaatgcataaa
gtttccgatggacaacgccgccgtgtccaaatatgcatgggccttctctacccatacaag
gttcttctactcgatgaggtgacagtagatctcgatgttgtgacaagaatggatcttctt
gatttcttcaaggaagaatgcgaactgagaggagtcatcattgtctatgcaactcatata
tttgatggactggagtcatgggcaacgcatttggcctacatccaagatggtgagttgctg
aggtcaggaaagatgtccgacatagttgaattgaaaaatgctgataacttgctgtcggtc
gttgagtcatggcttcgatcggaagtgaagctaccgaaaaaggaatccacagcacctatt
aactctacaacaccagcaagcaggcccagtccttttgattcttctccttttagatcatcc
cgtcatatggcatactatcgctga
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