Zoogloeaceae bacteirum Par-f-2: C3497_06795
Help
Entry
C3497_06795 CDS
T05440
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
zpa
Zoogloeaceae bacteirum Par-f-2
Pathway
zpa03030
DNA replication
zpa03410
Base excision repair
zpa03420
Nucleotide excision repair
zpa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C3497_06795 (ligA)
03410 Base excision repair
C3497_06795 (ligA)
03420 Nucleotide excision repair
C3497_06795 (ligA)
03430 Mismatch repair
C3497_06795 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zpa03032
]
C3497_06795 (ligA)
03400 DNA repair and recombination proteins [BR:
zpa03400
]
C3497_06795 (ligA)
Enzymes [BR:
zpa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C3497_06795 (ligA)
DNA replication proteins [BR:
zpa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C3497_06795 (ligA)
DNA repair and recombination proteins [BR:
zpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C3497_06795 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C3497_06795 (ligA)
MMR (mismatch excision repair)
DNA ligase
C3497_06795 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C3497_06795 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AVZ79169
LinkDB
All DBs
Position
complement(1435611..1437692)
Genome browser
AA seq
693 aa
AA seq
DB search
MNHSPQDPAGRMAWLRQTLHRYDHAYYVLDAPIVPDAEYDRLFAELQALEAQYPALASAD
SPTRRVGGAPLPELAPVRHAVPMLSIRTETDTSAQGVRNFDARVRNALGLTPADPPVEYL
GELKFDGLAISLRYEHGVLVRAATRGDGEIGEDVTHNVRTIRQIPLQLFGAAPAVLEVRG
EIYMRRDAFEALNARQRQAGEKTFVNPRNAAAGAVRQLDPRIAARRPLSFFAYGMGEQVG
FEPPATQAELLERLASLGLPVCEHRCLALGPEGLIAFHARIAAIRDRLPYDIDGVVYKVN
RFDLQRELGFVTREPRWAVAHKYPAQEEITRLIAIDVQVGRTGALTPVARLEPVFVGGVT
VTNATLHNQDEIDRKDVRIGDWVIVRRAGDVIPEVVGPVLERRVGNPPRYRLLEAHPTCP
VCGSHVVRAADEAVARCTGGLFCPAQRKQALLHFASRRAMDIEGLGDKLVDQLVDAGLVG
NPADLYRLAPQTLANLERMGEKSAQKLVAAIDRSRHTTLARFIFALGIRNVGEATARDLA
RHFGKLDALIAADTQTLQQVPDVGPVVAQSIATFFAEPHNREVIAQLRAAGVHWDESEPD
AAPDGPLAGKTLVLTGTLPNLSREQAKALIEAAGGKVTGSVSKKTDWVVAGAEAGAKLDK
AQALGVAIIDEEGLRRLLNRGGFPAMNTGEEHA
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacagcccgcaagatccagccggacgcatggcctggctcaggcagacgctgcat
cgctacgatcatgcctattacgtgctcgatgcgccgatcgtgccggatgccgagtacgat
cggctctttgccgagctgcaagcactggaagcccaatatccggcgctggccagcgccgat
tcgcccacccgccgggtcgggggcgcacctttgccggagttggcgccggtacgccacgcg
gtgccgatgttgtccatccgcaccgaaaccgataccagtgcgcaaggtgtgcgtaacttc
gatgccagggtccgcaatgccctgggtttgaccccggccgatccgccggtggagtatctt
ggcgagctgaaattcgatgggctggccatcagcctgcgctatgagcacggcgtgctggtg
cgggctgcaacccggggcgacggcgaaattggcgaggatgtgacccataacgtgcgcacc
attcgccagattcccttgcagcttttcggtgctgcaccggctgtgctggaagtgcgcggc
gaaatctacatgcgccgcgatgcgtttgaagcgctcaacgcccgtcagcgtcaagccggc
gaaaaaactttcgtcaatccgcgtaacgcagccgccggcgcggtgcgtcagctcgatccg
cgcatcgctgcccgccgcccgctgtcgttttttgcctacggcatgggcgagcaagtcggc
ttcgagccgcccgccacccaggcagagctgctcgaacgcctggccagcttgggattgccg
gtgtgcgagcaccgctgcctggcgctcggccctgagggattgattgcctttcatgcgcgc
attgccgccatccgtgaccgcttgccttacgacatcgacggcgtggtctacaaggtcaat
cgtttcgatctgcaacgcgaactcggctttgtcacccgcgagccgcgctgggcggtggcg
cacaagtacccggcgcaggaggagatcacccgcctgatcgccatcgacgtgcaggtcggc
cgcaccggtgcgctcacgccggtagcgcgcctggagccggtattcgtcggcggggtcacg
gtcaccaatgccacgctgcacaaccaggatgaaatcgaccgcaaggacgtgcgcatcggc
gactgggtgatcgtgcgcagggcaggggatgtgatccccgaagtggtcggaccggtgctc
gaacgccgcgtcggcaatccgccgcgctaccgcctgctggaagcgcatccgacctgtccg
gtgtgcggctcacacgtcgtgcgcgccgcggacgaagcggtagcccgttgcaccggcgga
ttgttctgtcccgcgcagcgcaaacaggcgctgttgcattttgcctctcggcgcgcgatg
gacatcgaaggcttgggcgacaagctggtcgatcagttagtcgatgccgggctggtcggc
aatccggccgatctttaccggctcgcgccccaaacgctcgccaaccttgaacgcatggga
gaaaaatccgcgcaaaaactggtggcggccatcgaccgcagccgacacaccacattggcg
cgctttatctttgcgctgggcatccgcaatgtaggggaggccactgcgcgcgatctggcc
cgccatttcggcaagctggacgcgctgatcgccgccgatacgcagaccttgcagcaggtg
ccggatgtggggccggtggtcgcgcaatcgatcgccactttttttgccgaacctcataac
cgcgaagtcatcgcgcaattgcgcgccgcaggcgtgcactgggatgagtccgaaccagac
gcggcgcccgatgggccgcttgccggcaagaccttggtgctgaccggcacactgccgaat
ctgagccgcgaacaggccaaagccttgatcgaagcggccggcggcaaggtgaccggctca
gtgtcgaagaaaaccgactgggtggtggccggtgccgaggcgggtgccaaattggacaaa
gctcaggcactgggcgtggccatcatcgatgaagaaggactgcgcagactgctgaaccgc
ggggggtttcccgcaatgaacacaggagaagaacacgcatga
DBGET
integrated database retrieval system
