Zunongwangia profunda: ZPR_3580
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Entry
ZPR_3580 CDS
T01216
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
zpr
Zunongwangia profunda
Pathway
zpr03030
DNA replication
zpr03410
Base excision repair
zpr03420
Nucleotide excision repair
zpr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zpr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ZPR_3580
03410 Base excision repair
ZPR_3580
03420 Nucleotide excision repair
ZPR_3580
03430 Mismatch repair
ZPR_3580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zpr03032
]
ZPR_3580
03400 DNA repair and recombination proteins [BR:
zpr03400
]
ZPR_3580
Enzymes [BR:
zpr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ZPR_3580
DNA replication proteins [BR:
zpr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ZPR_3580
DNA repair and recombination proteins [BR:
zpr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ZPR_3580
NER (nucleotide excision repair)
GGR (global genome repair) factors
ZPR_3580
MMR (mismatch excision repair)
DNA ligase
ZPR_3580
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ZPR_3580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
BRCT_2
PTCB-BRCT
HHH
RNA_ligase
Zn_ribbon_Top1
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ADF53895
UniProt:
D5BKI3
LinkDB
All DBs
Position
complement(3868843..3871281)
Genome browser
AA seq
812 aa
AA seq
DB search
MDIENKIYTLREELQHHNYQYYVLDNPEISDYDFDMKLKELQELEEKHPEFNDPNSPTQR
VGGAVTKNFTTVVHDYRMYSLSNSYSKEELQDWETRIRKLVDGDIKYTCELKYDGASMSL
MYDKGQLVQAVTRGDGFQGDDVTNNVKTIRSVPLKLRGDYPEKFHIRGEIVLPFEGFAKL
NAERVENGEEPYANPRNTASGSLKLQDSAEVAKRPLDCLLYNIAGENLPISSQFESLEKA
RDWGFKVPAESELKNNIEEVLSYINYWDIHRHDLPYETDGVVVKVNDFGQQEELGYTAKS
PRWAMAYKFKAEQETTKLHKITYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIAK
LDIREGDKVFVEKGGEIIPKIVGVDFKQRDPDSEPTTYAIYCPECGTELQRKEGEAQHFC
PNYVGCPPQIIGRMEHFVSRKAMDIDGLGKGTIEILYYNGIINNYSDFYYLTYDDIIGQE
RWLDNEEAGIKKSGELQVKLGQAIYALSQGWGSITRADSEKIGNEIVYLEEIFSLNIAEI
SGIDEKKFKRFLMELNTAIQRVAISDYTSMEDCVSVNLLIDLKFPDHQENQPAKEALKNA
DYIDELLRNESFQHYPKFDDFITKISDRSRISIQKKTTENILNSVEESKKRTFDKVLFAL
GIRDVGEVSARKIAEHFGNIDKLMAANTEELIQLRDVGERVAASIIEFFTDEENIDIVKR
LREKDLQFEMEEKETSSNKLEGLSFVVSGTFSISRSELKKHIEENGGKNLSSLSKSTNYL
IVGEKMGPSKKVKAEKEGIAMISEEEFFKMIE
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggatatcgaaaataaaatatatacacttcgagaagaattacagcatcataattatcaa
tattatgttttagacaatcctgaaattagcgattatgattttgatatgaagctgaaagaa
cttcaggaattagaagaaaagcatcctgaatttaatgatcctaactcgccaacgcagcgt
gtagggggcgccgtaactaagaattttacaacggtggtccatgattatcgtatgtactct
ctttctaattcatattctaaagaagaattacaagattgggaaacgcgtattcgaaagtta
gtcgacggcgatataaaatatacctgcgagttgaagtatgatggcgcgtcgatgagtctt
atgtatgacaaggggcaattggtacaggcggtaacacgtggagacggatttcagggagac
gatgtaacaaacaacgtaaaaacgattcgctcggtacctttaaaattacgaggggattat
ccagagaaatttcatattcgaggtgagatcgtattgccttttgaaggtttcgcgaagttg
aatgccgagcgtgttgagaatggagaagaaccttatgcgaatccgcgtaatacggcgtca
ggaagtttgaaattacaggatagtgctgaggtggcgaaacggccattggattgtttgctt
tataatattgcaggtgaaaatctaccgatttcatctcaatttgaaagtctagagaaagcc
agagattggggttttaaagttcccgcagaaagtgaacttaaaaataatatcgaagaggtt
ttaagctatattaactactgggatatccatcgtcatgatttgccttatgagactgatggg
gtagtagtgaaagttaatgattttggccagcaggaagagttaggttataccgcaaaatca
ccgcgttgggcgatggcctataagtttaaagccgaacaggaaacgacaaagctccataaa
ataacctatcaggttggtcgtacaggcgccattacaccggtggcaaatttagaaccggtg
caattggcaggaaccattgtgaaacgggcgtctttgcataatgccgatcagatcgcgaaa
ctagacattcgggaaggcgataaagtttttgtagaaaaaggaggggaaattatccctaaa
atcgtgggagtagattttaaacaacgcgatccagattctgaacctacaacatatgccatt
tattgcccggaatgtggaaccgaattacaacgtaaagagggcgaagcacagcatttttgt
ccgaattacgtagggtgcccaccgcaaattattggtaggatggagcattttgtatcacga
aaagccatggatattgatggtttgggaaaaggaacgatagaaatcttatattacaatgga
atcattaataattattccgatttctattatctcacatacgatgatattattggacaggaa
cgttggttggataacgaggaagccgggattaaaaaatcaggtgaacttcaggtaaaatta
ggtcaggcgatttatgcgcttagtcaggggtggggaagtataaccagagccgattccgaa
aaaataggaaatgaaattgtttatttagaggaaatttttagtctaaacatagccgaaatt
tcagggatagacgaaaagaaattcaagcgatttctgatggagttaaatacggcgatacaa
cgggtagctatttcagattatacgtcaatggaagattgtgtttcagtaaatttactgatc
gacttgaaatttcccgatcatcaggaaaaccagccggcaaaagaagcattaaagaatgca
gattatatcgatgaattgcttcgtaatgaaagctttcagcactacccaaaattcgatgat
tttatcactaaaatctcagaccgcagccggatcagcattcagaagaaaaccactgaaaat
atattaaactccgtagaggaatctaaaaaacgaactttcgataaagtattatttgcttta
ggaattcgtgatgtgggggaagtaagtgcccgaaaaattgcggagcactttgggaatatt
gataagctcatggcggcgaatacagaagaacttatccaacttcgcgatgtgggggaacgt
gttgctgcaagtatcatcgaattttttaccgatgaggaaaacattgacatcgtaaaacgc
ttacgggaaaaagacctgcagtttgaaatggaagaaaaagagaccagttctaacaaatta
gaagggcttagttttgttgtttcgggtaccttttctatttctagaagtgaactgaaaaag
catattgaagaaaatgggggtaaaaatttaagttctttatctaaaagcacgaattacctt
attgttggagaaaaaatgggtccaagtaaaaaagtaaaggcagagaaagaaggaattgcc
atgattagtgaagaagaattttttaagatgattgaatga
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