KEGG   Zygosaccharomyces rouxii: ZYRO0E08448g
Entry
ZYRO0E08448g      CDS       T01118                                 
Name
(RefSeq) mRNA splicing protein SMB1
  KO
K11086  small nuclear ribonucleoprotein B and B'
Organism
zro  Zygosaccharomyces rouxii
Pathway
zro03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zro00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    ZYRO0E08448g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zro03019]
    ZYRO0E08448g
   03041 Spliceosome [BR:zro03041]
    ZYRO0E08448g
   03032 DNA replication proteins [BR:zro03032]
    ZYRO0E08448g
Messenger RNA biogenesis [BR:zro03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     ZYRO0E08448g
Spliceosome [BR:zro03041]
 Complex A
  U1 snRNP components
   Sm proteins
    ZYRO0E08448g
  U2 snRNP components
    ZYRO0E08448g
 Complex B
  U1 snRNP components
    ZYRO0E08448g
  U4/U6.U5 tri-snRNP components
    ZYRO0E08448g
 Complex C
  U2 snRNP components
    ZYRO0E08448g
DNA replication proteins [BR:zro03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     ZYRO0E08448g
SSDB
Motif
Pfam: LSM LSM12_LSM DA1-like
Other DBs
NCBI-GeneID: 8204848
NCBI-ProteinID: XP_002499293
UniProt: C5E4S7
LinkDB
Position
E:complement(674946..675395)
AA seq 149 aa
MSKVQVKQDARLPDLIGFRLRVLTQDGRVYVGELLAFDKFMNLVLKNCIEERIPKTQLDK
LQNETSDKNDIKVEKRTLGLAILRGEQVLSSVVQDKPQLSKRERLDGIKNQEKKISKERR
SRNKQTKEKKNGKVEKKKFQPPPGLRKRV
NT seq 450 nt   +upstreamnt  +downstreamnt
atgagcaaggtgcaggtgaaacaggatgcaagactaccagacctaattggatttagacta
cgtgttctgactcaagatggtagagtttatgtgggggagctgctagcatttgataaattt
atgaatctagtccttaaaaactgtatcgaagagcgcataccaaagactcaattggacaag
ctgcaaaatgaaaccagtgataagaacgatatcaaagtagagaaaaggacactcggactg
gctattctcagaggtgaacaagtactatcaagcgtagtacaggacaaaccacagctatcc
aagagagagagattagacggtataaagaatcaggaaaaaaagataagcaaggaaaggaga
tcgagaaataaacagacaaaggaaaagaaaaacggtaaggtagagaagaaaaagttccaa
cctccacctggtcttaggaagcgtgtataa

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