Zootoca vivipara (common lizard): 118076389
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Entry
118076389 CDS
T07275
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
118076389 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zvi03000
]
118076389 (KDM2B)
04121 Ubiquitin system [BR:
zvi04121
]
118076389 (KDM2B)
03036 Chromosome and associated proteins [BR:
zvi03036
]
118076389 (KDM2B)
Enzymes [BR:
zvi01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
118076389 (KDM2B)
Transcription factors [BR:
zvi03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
118076389 (KDM2B)
Ubiquitin system [BR:
zvi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
118076389 (KDM2B)
Chromosome and associated proteins [BR:
zvi03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
118076389 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
118076389 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
DUF7885
Cupin_8
JmjC
LRR_At1g61320_AtMIF1
LRR_At5g56370
Motif
Other DBs
NCBI-GeneID:
118076389
NCBI-ProteinID:
XP_034954994
LinkDB
All DBs
Position
LG17:2287218..2379905
Genome browser
AA seq
1262 aa
AA seq
DB search
MEAEKDSGRRLRSIGRRLYDEDEDLSDVEEIVSIRGFNLEEKLRSKMYRGDFVRPMEGKD
FTFEYVQREALRVPLIFRSKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNTQKGTEM
SMSQFVRYYETPEAERKKLYNVISLEFSHTKLANIVKRPNVVDLVDWVDNMWPRHLKERQ
TDATNTISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLQNL
ELYEEWVLSGKQSDIFLGDRVELCQRIELKQGHTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLHIYEIEDRTRVQAKFRYPFYYEMCWYVLERYVFCVTQRSHLSKEYLKESMLI
DTTRKRSLDSFSSDSWVDMDDESCDVHTREEKDDCLEKIPKALADGSSSPNSIHSEGKEV
SGRKQKSTAPRFLKRTLSNESEESVKSTPADYPKTPTGSPATEVSAKWTHLTEFELKGLK
ALVEKLESLPENKKCIPEGIEDPQSLLEDMKNILKEHADDDQNLAISGVPVVSWPKKNAK
NRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGG
PGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSICNEIIHPG
CLKVRESDGLVNEELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLLKEQKINR
ENKEVVPDATKRKVECEEPPRKKSEDHPKKSPVDPLLRRKSEEVHPRRKRKFEKPQEPAM
RKRLKLGKEEKLFRKKRRSWKATDDRTALVKPLRRFKQEPEDDLPEEPPKSKESDQSRSS
SPTAGPSSEGTESRDKKKFKIRRKARLPNKELSKELSKELNQEIQKTENSLANENHQPIK
SEPESENEEPKRVLCPERPHRFSKGLNGTPRELRHQLLSSLRSSTPRAAARPPRSLSPPK
CIQMERHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHSELCLCMRVCKTWNR
WCCDKRLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSGTNISKKQLSWLINRLPGLRDL
QLSGCSWIAVSALCSSSCPLLRTLDAQWVEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRH
ITELCLSGLDITDASLRLIIRHMPLLSKLNLSYCNHMTDQSINLLTAVGTTTRDSLTEVI
LQDCNKVTDQCLSYFKRCGSICRIDLRYCKQVTKEGCEQFIAEMSVSIQFSQVEEKLLQK
LS
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagactctggaagaagattgcgatcgatcggcaggaggctgtacgac
gaggacgaggacctctccgacgtggaggagatcgtcagcatccgcggcttcaacctggag
gagaaactaaggagcaaaatgtaccgcggagactttgtgcgacccatggaggggaaagat
ttcacttttgagtatgtgcagcgagaagcacttcgagtccccctcatcttccgaagtaag
gatggactgggaattaagatgccggacccagatttcactgtacgagatgtcaagctgcta
gttgggagccgtcggattgtggacgtaatggatgtcaacactcaaaagggcacagagatg
agcatgtcccagtttgtgcgatattacgaaaccccggaggcagagcgcaagaagttgtac
aacgtgatcagcctcgagttcagccacacgaagctggcaaacatcgtcaagcgccccaat
gtggtagacttggtcgactgggtggataacatgtggcctcggcatctgaaggagagacag
acagacgccaccaataccatttcagagatgaagtatccaaaagtaaaaaagtactgtctg
atgagtgtgaaaggatgcttcacagatttccacattgattttgggggcacttcagtttgg
tatcatgtattccgtggagggaagatcttctggctgatccctccaactttgcagaaccta
gaactctatgaggaatgggttctctcagggaagcaaagtgacatctttctgggcgacagg
gtggagctatgccaaagaattgaactgaaacaagggcacaccttcttcattccttcaggg
tggatacatgctgtctatactccagtagattccttggtgtttggtggaaacatcctgcat
agctttaacgttcccatgcagcttcacatctatgagatcgaggatagaacaagggtgcaa
gccaagttccgttaccctttctactatgagatgtgttggtatgttctggagagatacgtg
ttttgcgtgacccagcgctcccacctcagcaaagagtatctgaaagaatcaatgttaatt
gatacaacaaggaaacgcagcttagatagcttctcatcggattcctgggtagacatggat
gacgaatcgtgtgatgtccacacccgggaagagaaggacgactgtctggaaaaaatcccc
aaggccttggcggacggatcgtcttctcccaacagtatacattcagaagggaaggaggtt
tcagggaggaagcaaaaatctacagccccccgcttcctcaaaaggactttgtccaatgag
tcagaagaaagtgtaaaatcaacaccggcagactatcccaaaactcccacgggctcccca
gctacagaggtctcggcgaaatggactcacctgacagagtttgaactgaagggtttgaaa
gcccttgttgaaaaacttgaatcccttccggagaataagaaatgtatacctgaaggcatc
gaggaccctcagtctctgctggaggatatgaagaacatcctgaaggagcatgcagacgat
gaccaaaatcttgccatttctggggtcccagtggtatcgtggcctaagaaaaacgcaaag
aaccgggccgttgggagacccaaagggaaattgggccctgcttcagccgtgaagctcgcg
gcaaaccggacaactgcaggagcacgccggaggaggacgcgatgtcgcaagtgcgaggcc
tgcctgcgcacagagtgtggcgagtgtcacttctgcaaggacatgaagaagtttggtggg
cctggcaggatgaagcagtcatgcattatgaggcagtgcattgcgccagtgctgccccac
acggccgtgtgcctggtgtgtggggaagcagggaaagaagatacggtggaggaggaggag
ggcaagttcaacctcatgctcatggagtgttccatctgcaatgaaatcatacacccagga
tgcctcaaggtgcgggaatcagacggcctcgtcaacgaagagctgcccaactgctgggaa
tgcccaaagtgcaaccacgctggcaaaactgggaaagcgtacaagcaaaagcgcggacca
gggttcaagtatgcgtcaaacctgcccggctctctgctgaaagagcagaagatcaaccga
gagaacaaagaggttgttccagatgccaccaagcggaaagtcgagtgtgaggagccccct
cggaaaaagtccgaggaccaccccaagaagtctcctgttgaccctcttttgaggagaaag
tctgaggaagtccacccacggcggaaacggaaatttgagaagccccaagagcctgcaatg
aggaagcggttaaaactaggcaaagaagagaagctgttcaggaaaaagaggcgatcgtgg
aaggccacagacgaccgaactgccctggtcaagcctctcaggcgcttcaagcaggagcct
gaggacgatctcccagaggaacctccgaaaagcaaggagagtgaccagtctcgctctagc
tcccctacggcggggccaagctcagagggcacagagtcccgagacaagaagaagttcaag
atccggcggaaagcccgcctccccaacaaggagctgagcaaggagctaagtaaagagctc
aaccaggagatccagaagacagagaacagccttgccaatgagaaccaccagcccatcaag
tctgagccagagagtgaaaatgaggagcccaagcgggtgctgtgccccgagcggcctcac
cgtttcagcaagggcttgaatggaaccccccgagaactccggcaccagctcttgtcgagc
ctcaggagcagcaccccccgggcagctgcccggcctccccgctccctctcgccccccaag
tgcattcagatggagcgtcacgtcatccggccaccccccatcagcccacccccagactca
ctcccgctggatgatggggcagcccacgtcatgcaaagggaagtctggatggctgtcttc
agctacctcagccacagcgaactgtgtctctgcatgagggtttgcaagacctggaacaga
tggtgctgtgataaaagactgtggaccaaaatagacctaaaccactgtaaatccatcacc
cctctcatgctcagtggtattattaggaggcagccggtcacgcttgatctaagtgggaca
aacatatcgaaaaagcagctgagctggctcatcaaccggctcccaggtctccgagatctg
caattgtcagggtgctcatggattgcagtgtctgctctctgcagttctagttgtccactc
ctccgaacactggatgcgcagtgggtggaaggcttaaaagatgcacaaatgagagatctt
ttgtcaccaccaactgacaacaggccaggccaaattgacaaccggagcaaactgcgccac
atcacagagctgtgcctgtctggcttggacatcactgatgcttccctgcgtttgattatc
cggcacatgcctctactctccaagctcaacctcagttactgcaaccacatgacagatcag
tccattaacctgctaacagctgtgggaaccactacacgggactccctaacagaagttatt
ttgcaagactgcaataaggtgacagaccaatgtctctcctatttcaagcggtgtggaagc
atctgccggattgatctgaggtactgcaagcaagtgaccaaggaaggttgtgagcagttc
atcgcagagatgtctgtgagcattcagtttagtcaagtggaagagaaactgctgcagaag
ttgagttag
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integrated database retrieval system
