Zootoca vivipara (common lizard): 118076389
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Entry
118076389 CDS
T07275
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
118076389 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zvi03000
]
118076389 (KDM2B)
04121 Ubiquitin system [BR:
zvi04121
]
118076389 (KDM2B)
03036 Chromosome and associated proteins [BR:
zvi03036
]
118076389 (KDM2B)
Enzymes [BR:
zvi01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
118076389 (KDM2B)
Transcription factors [BR:
zvi03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
118076389 (KDM2B)
Ubiquitin system [BR:
zvi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
118076389 (KDM2B)
Chromosome and associated proteins [BR:
zvi03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
118076389 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
118076389 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
LRR_FBXL15
Cupin_8
JmjC
LRR_At1g61320_AtMIF1
LRR_At5g56370
Motif
Other DBs
NCBI-GeneID:
118076389
NCBI-ProteinID:
XP_034954994
LinkDB
All DBs
Position
LG17:2287218..2379905
Genome browser
AA seq
1262 aa
AA seq
DB search
MEAEKDSGRRLRSIGRRLYDEDEDLSDVEEIVSIRGFNLEEKLRSKMYRGDFVRPMEGKD
FTFEYVQREALRVPLIFRSKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNTQKGTEM
SMSQFVRYYETPEAERKKLYNVISLEFSHTKLANIVKRPNVVDLVDWVDNMWPRHLKERQ
TDATNTISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLQNL
ELYEEWVLSGKQSDIFLGDRVELCQRIELKQGHTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLHIYEIEDRTRVQAKFRYPFYYEMCWYVLERYVFCVTQRSHLSKEYLKESMLI
DTTRKRSLDSFSSDSWVDMDDESCDVHTREEKDDCLEKIPKALADGSSSPNSIHSEGKEV
SGRKQKSTAPRFLKRTLSNESEESVKSTPADYPKTPTGSPATEVSAKWTHLTEFELKGLK
ALVEKLESLPENKKCIPEGIEDPQSLLEDMKNILKEHADDDQNLAISGVPVVSWPKKNAK
NRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGG
PGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSICNEIIHPG
CLKVRESDGLVNEELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLLKEQKINR
ENKEVVPDATKRKVECEEPPRKKSEDHPKKSPVDPLLRRKSEEVHPRRKRKFEKPQEPAM
RKRLKLGKEEKLFRKKRRSWKATDDRTALVKPLRRFKQEPEDDLPEEPPKSKESDQSRSS
SPTAGPSSEGTESRDKKKFKIRRKARLPNKELSKELSKELNQEIQKTENSLANENHQPIK
SEPESENEEPKRVLCPERPHRFSKGLNGTPRELRHQLLSSLRSSTPRAAARPPRSLSPPK
CIQMERHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHSELCLCMRVCKTWNR
WCCDKRLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSGTNISKKQLSWLINRLPGLRDL
QLSGCSWIAVSALCSSSCPLLRTLDAQWVEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRH
ITELCLSGLDITDASLRLIIRHMPLLSKLNLSYCNHMTDQSINLLTAVGTTTRDSLTEVI
LQDCNKVTDQCLSYFKRCGSICRIDLRYCKQVTKEGCEQFIAEMSVSIQFSQVEEKLLQK
LS
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagactctggaagaagattgcgatcgatcggcaggaggctgtacgac
gaggacgaggacctctccgacgtggaggagatcgtcagcatccgcggcttcaacctggag
gagaaactaaggagcaaaatgtaccgcggagactttgtgcgacccatggaggggaaagat
ttcacttttgagtatgtgcagcgagaagcacttcgagtccccctcatcttccgaagtaag
gatggactgggaattaagatgccggacccagatttcactgtacgagatgtcaagctgcta
gttgggagccgtcggattgtggacgtaatggatgtcaacactcaaaagggcacagagatg
agcatgtcccagtttgtgcgatattacgaaaccccggaggcagagcgcaagaagttgtac
aacgtgatcagcctcgagttcagccacacgaagctggcaaacatcgtcaagcgccccaat
gtggtagacttggtcgactgggtggataacatgtggcctcggcatctgaaggagagacag
acagacgccaccaataccatttcagagatgaagtatccaaaagtaaaaaagtactgtctg
atgagtgtgaaaggatgcttcacagatttccacattgattttgggggcacttcagtttgg
tatcatgtattccgtggagggaagatcttctggctgatccctccaactttgcagaaccta
gaactctatgaggaatgggttctctcagggaagcaaagtgacatctttctgggcgacagg
gtggagctatgccaaagaattgaactgaaacaagggcacaccttcttcattccttcaggg
tggatacatgctgtctatactccagtagattccttggtgtttggtggaaacatcctgcat
agctttaacgttcccatgcagcttcacatctatgagatcgaggatagaacaagggtgcaa
gccaagttccgttaccctttctactatgagatgtgttggtatgttctggagagatacgtg
ttttgcgtgacccagcgctcccacctcagcaaagagtatctgaaagaatcaatgttaatt
gatacaacaaggaaacgcagcttagatagcttctcatcggattcctgggtagacatggat
gacgaatcgtgtgatgtccacacccgggaagagaaggacgactgtctggaaaaaatcccc
aaggccttggcggacggatcgtcttctcccaacagtatacattcagaagggaaggaggtt
tcagggaggaagcaaaaatctacagccccccgcttcctcaaaaggactttgtccaatgag
tcagaagaaagtgtaaaatcaacaccggcagactatcccaaaactcccacgggctcccca
gctacagaggtctcggcgaaatggactcacctgacagagtttgaactgaagggtttgaaa
gcccttgttgaaaaacttgaatcccttccggagaataagaaatgtatacctgaaggcatc
gaggaccctcagtctctgctggaggatatgaagaacatcctgaaggagcatgcagacgat
gaccaaaatcttgccatttctggggtcccagtggtatcgtggcctaagaaaaacgcaaag
aaccgggccgttgggagacccaaagggaaattgggccctgcttcagccgtgaagctcgcg
gcaaaccggacaactgcaggagcacgccggaggaggacgcgatgtcgcaagtgcgaggcc
tgcctgcgcacagagtgtggcgagtgtcacttctgcaaggacatgaagaagtttggtggg
cctggcaggatgaagcagtcatgcattatgaggcagtgcattgcgccagtgctgccccac
acggccgtgtgcctggtgtgtggggaagcagggaaagaagatacggtggaggaggaggag
ggcaagttcaacctcatgctcatggagtgttccatctgcaatgaaatcatacacccagga
tgcctcaaggtgcgggaatcagacggcctcgtcaacgaagagctgcccaactgctgggaa
tgcccaaagtgcaaccacgctggcaaaactgggaaagcgtacaagcaaaagcgcggacca
gggttcaagtatgcgtcaaacctgcccggctctctgctgaaagagcagaagatcaaccga
gagaacaaagaggttgttccagatgccaccaagcggaaagtcgagtgtgaggagccccct
cggaaaaagtccgaggaccaccccaagaagtctcctgttgaccctcttttgaggagaaag
tctgaggaagtccacccacggcggaaacggaaatttgagaagccccaagagcctgcaatg
aggaagcggttaaaactaggcaaagaagagaagctgttcaggaaaaagaggcgatcgtgg
aaggccacagacgaccgaactgccctggtcaagcctctcaggcgcttcaagcaggagcct
gaggacgatctcccagaggaacctccgaaaagcaaggagagtgaccagtctcgctctagc
tcccctacggcggggccaagctcagagggcacagagtcccgagacaagaagaagttcaag
atccggcggaaagcccgcctccccaacaaggagctgagcaaggagctaagtaaagagctc
aaccaggagatccagaagacagagaacagccttgccaatgagaaccaccagcccatcaag
tctgagccagagagtgaaaatgaggagcccaagcgggtgctgtgccccgagcggcctcac
cgtttcagcaagggcttgaatggaaccccccgagaactccggcaccagctcttgtcgagc
ctcaggagcagcaccccccgggcagctgcccggcctccccgctccctctcgccccccaag
tgcattcagatggagcgtcacgtcatccggccaccccccatcagcccacccccagactca
ctcccgctggatgatggggcagcccacgtcatgcaaagggaagtctggatggctgtcttc
agctacctcagccacagcgaactgtgtctctgcatgagggtttgcaagacctggaacaga
tggtgctgtgataaaagactgtggaccaaaatagacctaaaccactgtaaatccatcacc
cctctcatgctcagtggtattattaggaggcagccggtcacgcttgatctaagtgggaca
aacatatcgaaaaagcagctgagctggctcatcaaccggctcccaggtctccgagatctg
caattgtcagggtgctcatggattgcagtgtctgctctctgcagttctagttgtccactc
ctccgaacactggatgcgcagtgggtggaaggcttaaaagatgcacaaatgagagatctt
ttgtcaccaccaactgacaacaggccaggccaaattgacaaccggagcaaactgcgccac
atcacagagctgtgcctgtctggcttggacatcactgatgcttccctgcgtttgattatc
cggcacatgcctctactctccaagctcaacctcagttactgcaaccacatgacagatcag
tccattaacctgctaacagctgtgggaaccactacacgggactccctaacagaagttatt
ttgcaagactgcaataaggtgacagaccaatgtctctcctatttcaagcggtgtggaagc
atctgccggattgatctgaggtactgcaagcaagtgaccaaggaaggttgtgagcagttc
atcgcagagatgtctgtgagcattcagtttagtcaagtggaagagaaactgctgcagaag
ttgagttag
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integrated database retrieval system
