DNA Repair and Recombination Proteins - Pan paniscus (bonobo)

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     KO
 Eukaryotic type
   SSBR (single strand breaks repair)
     Direct repair
     BER (base exicision repair)
       DNA glycosylases
       AP endonucleases
       Long Patch-BER factors
         DNA polymerase delta complex
         DNA polymerase epsilon complex
         100987805 PCNA; proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen 
         100981501 FEN1; flap endonuclease 1
K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] 
         100969963 LIG1; DNA ligase 1 isoform X6
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
       Short Patch-BER factors
       Other BER factors
     NER (nucleotide excision repair)
       GGR (global genome repair) factors
       TCR (transcription coupled repair) factors
       TFIIH complex
       RPA (replication factor A)
       Other NER factors
         100980076 XPA; DNA repair protein complementing XP-A cells isoform X2
         100988695 ERCC1; DNA excision repair protein ERCC-1 isoform X3
         100987667 ERCC4; DNA repair endonuclease XPF
         100980042 ERCC5; DNA repair protein complementing XP-G cells isoform X1
         100969963 LIG1; DNA ligase 1 isoform X6
         100983250 MMS19; LOW QUALITY PROTEIN: MMS19 nucleotide excision repair protein homolog
         100979601 CUL3; cullin-3 isoform X1
         100984060 CUL5; LOW QUALITY PROTEIN: cullin-5
         100987164 elongin-C-like
         100994363 ELOC; elongin-C isoform X1
         100980207 elongin-C-like
         100977090 elongin-C-like
         100994395 elongin-B
         117976349 ELOB; elongin-B isoform X1
         117979314 elongin-B-like
         100985726 ELOA; elongin-A
         100978980 ELOA2; elongin-A2
         117976786 ELOA3; elongin-A3
         100967988 LOW QUALITY PROTEIN: elongin-A3
         117978372 elongin-A3
         100968445 UBAP2; ubiquitin-associated protein 2 isoform X2
         100973649 UBAP2L; ubiquitin-associated protein 2-like isoform X8
K10847 XPA; DNA-repair protein complementing XP-A cells 
K10849 ERCC1; DNA excision repair protein ERCC-1 
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] 
K10846 ERCC5; DNA excision repair protein ERCC-5 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K15075 MET18; DNA repair/transcription protein MET18/MMS19 
K03869 CUL3; cullin 3 
K10612 CUL5; cullin 5 
K03872 ELOC; elongin-C 
K03872 ELOC; elongin-C 
K03872 ELOC; elongin-C 
K03872 ELOC; elongin-C 
K03873 ELOB; elongin-B 
K03873 ELOB; elongin-B 
K03873 ELOB; elongin-B 
K15076 ELOA; elongin-A 
K15076 ELOA; elongin-A 
K15076 ELOA; elongin-A 
K15076 ELOA; elongin-A 
K15076 ELOA; elongin-A 
K26545 UBAP2; ubiquitin-associated protein 2 
K26545 UBAP2; ubiquitin-associated protein 2 
     MMR (mismatch excision repair)
       Mismatch and loop recognition factors
       MutL homologs
       DNA polymerase delta complex
       RPA (replication factor A)
       RFC (replication factor C)
       Other MMR factors
         100987805 PCNA; proliferating cell nuclear antigen
         100993288 EXO1; exonuclease 1 isoform X1
         100971286 HMGB1; high mobility group protein B1
         106634197 LOW QUALITY PROTEIN: putative high mobility group protein B1-like 1
         100969724 high mobility group protein B1-like
         100980430 high mobility group protein B1-like
         106634503 high mobility group protein B1-like
         117981477 high mobility group protein B1-like
         100982133 high mobility group protein B1-like
         100969963 LIG1; DNA ligase 1 isoform X6
         100987439 WDR76; WD repeat-containing protein 76 isoform X1
K04802 PCNA; proliferating cell nuclear antigen 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10802 HMGB1; high mobility group protein B1 
K10802 HMGB1; high mobility group protein B1 
K10802 HMGB1; high mobility group protein B1 
K10802 HMGB1; high mobility group protein B1 
K10802 HMGB1; high mobility group protein B1 
K10802 HMGB1; high mobility group protein B1 
K10802 HMGB1; high mobility group protein B1 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K24755 WDR76; WD repeat-containing protein 76 
   DSBR (double strand breaks repair)
   TLS (translesion DNA synthesis) factors
   Check point factors
   Other factors with a suspected DNA repair function
 
 Prokaryotic type

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Last updated: March 29, 2024