KEGG   PATHWAY: lcf00240
Entry
lcf00240                    Pathway                                
Name
Pyrimidine metabolism - Lates calcarifer (barramundi perch)
Class
Metabolism; Nucleotide metabolism
Pathway map
lcf00240  Pyrimidine metabolism
lcf00240

Module
lcf_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:lcf00240]
lcf_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:lcf00240]
lcf_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:lcf00240]
lcf_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:lcf00240]
lcf_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:lcf00240]
Other DBs
GO: 0006220 0006213
Organism
Lates calcarifer (barramundi perch) [GN:lcf]
Gene
108890455  CAD protein [KO:K11540] [EC:6.3.5.5 2.1.3.2 3.5.2.3]
108889701  dihydroorotate dehydrogenase (quinone), mitochondrial isoform X2 [KO:K00254] [EC:1.3.5.2]
108902828  uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
108883744  cmpk; UMP-CMP kinase [KO:K13800] [EC:2.7.4.14]
108888149  UMP-CMP kinase 2, mitochondrial isoform X1 [KO:K13809] [EC:2.7.4.14]
108876810  nucleoside diphosphate kinase A2 [KO:K00940] [EC:2.7.4.6]
108882397  nucleoside diphosphate kinase A 2 [KO:K00940] [EC:2.7.4.6]
108895557  nme6; nucleoside diphosphate kinase 6 [KO:K00940] [EC:2.7.4.6]
108878852  nucleoside diphosphate kinase 7 isoform X1 [KO:K00940] [EC:2.7.4.6]
108897010  nucleoside diphosphate kinase 6 [KO:K00940] [EC:2.7.4.6]
108881003  nme4; nucleoside diphosphate kinase, mitochondrial isoform X1 [KO:K00940] [EC:2.7.4.6]
108881025  nucleoside diphosphate kinase 3 isoform X1 [KO:K00940] [EC:2.7.4.6]
108895671  LOW QUALITY PROTEIN: adenylate kinase 9 [KO:K18533] [EC:2.7.4.3 2.7.4.6]
108888779  ectonucleoside triphosphate diphosphohydrolase 3 [KO:K01510] [EC:3.6.1.5]
108899023  ectonucleoside triphosphate diphosphohydrolase 1 isoform X1 [KO:K01510] [EC:3.6.1.5]
108902724  cant1a; soluble calcium-activated nucleotidase 1 isoform X2 [KO:K12304] [EC:3.6.1.6]
108875629  LOW QUALITY PROTEIN: soluble calcium-activated nucleotidase 1b [KO:K12304] [EC:3.6.1.6]
108878709  ectonucleoside triphosphate diphosphohydrolase 4 isoform X1 [KO:K12305] [EC:3.6.1.6]
108891815  ectonucleoside triphosphate diphosphohydrolase 6-like [KO:K01511] [EC:3.6.1.6]
108892557  entpd5a; ectonucleoside triphosphate diphosphohydrolase 5 [KO:K01511] [EC:3.6.1.6]
108896911  entpd5b; ectonucleoside triphosphate diphosphohydrolase 5 isoform X1 [KO:K01511] [EC:3.6.1.6]
108873841  ectonucleoside triphosphate diphosphohydrolase 6 [KO:K01511] [EC:3.6.1.6]
108887580  venom phosphodiesterase 1 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
108873497  enpp1; ectonucleotide pyrophosphatase/phosphodiesterase family member 1 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
108901284  asmtl; probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein isoform X2 [KO:K25435] [EC:3.6.1.- 2.1.1.-]
108899692  bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] [KO:K01518] [EC:3.6.1.17]
108898473  ctps1b; CTP synthase 1 isoform X1 [KO:K01937] [EC:6.3.4.2]
108900283  CTP synthase 1 [KO:K01937] [EC:6.3.4.2]
108873983  uridine-cytidine kinase 1 [KO:K00876] [EC:2.7.1.48]
108883811  uck2b; uridine-cytidine kinase 2-B [KO:K00876] [EC:2.7.1.48]
108878924  uridine-cytidine kinase 2-A [KO:K00876] [EC:2.7.1.48]
108889518  uckl1b; uridine-cytidine kinase-like 1 isoform X1 [KO:K00876] [EC:2.7.1.48]
108890449  si:ch211-243j20.2; uridine-cytidine kinase-like 1 isoform X1 [KO:K00876] [EC:2.7.1.48]
108882191  LOW QUALITY PROTEIN: uridine-cytidine kinase-like 1a [KO:K00876] [EC:2.7.1.48]
108873479  cytosolic 5'-nucleotidase 1A [KO:K01081] [EC:3.1.3.5]
108879257  LOW QUALITY PROTEIN: 5'-nucleotidase, cytosolic II, like 1 [KO:K01081] [EC:3.1.3.5]
108900354  LOW QUALITY PROTEIN: 5'-nucleotidase, cytosolic IAa [KO:K01081] [EC:3.1.3.5]
108875599  nt5c2b; cytosolic purine 5'-nucleotidase isoform X1 [KO:K01081] [EC:3.1.3.5]
108893779  LOW QUALITY PROTEIN: cytosolic 5'-nucleotidase 1A [KO:K01081] [EC:3.1.3.5]
108898040  cytosolic 5'-nucleotidase 1A isoform X1 [KO:K01081] [EC:3.1.3.5]
108902141  5'(3')-deoxyribonucleotidase, mitochondrial isoform X1 [KO:K01081] [EC:3.1.3.5]
108895338  LOW QUALITY PROTEIN: 5'-nucleotidase, cytosolic IIa [KO:K01081] [EC:3.1.3.5]
108892414  cytosolic 5'-nucleotidase 1A [KO:K01081] [EC:3.1.3.5]
108892419  cytosolic 5'-nucleotidase 1A isoform X1 [KO:K01081] [EC:3.1.3.5]
108874909  snake venom 5'-nucleotidase [KO:K19970] [EC:3.1.3.5]
108882246  nt5e; 5'-nucleotidase [KO:K19970] [EC:3.1.3.5]
108901065  uridine phosphorylase 2 [KO:K00757] [EC:2.4.2.3]
108891972  upp1; uridine phosphorylase 1 [KO:K00757] [EC:2.4.2.3]
108888529  uncharacterized protein zgc:136858 isoform X1 [KO:K16330] [EC:4.2.1.70 2.7.1.83]
108883163  cytosolic 5'-nucleotidase 3 isoform X1 [KO:K24242] [EC:3.1.3.91]
108891184  LOW QUALITY PROTEIN: cytosolic 5'-nucleotidase 3-like [KO:K24242] [EC:3.1.3.91]
108901689  7-methylguanosine phosphate-specific 5'-nucleotidase [KO:K24242] [EC:3.1.3.91]
108901729  7-methylguanosine phosphate-specific 5'-nucleotidase-like [KO:K24242] [EC:3.1.3.91]
108901360  cytosolic 5'-nucleotidase 3 isoform X1 [KO:K24242] [EC:3.1.3.91]
108897862  cytidine deaminase-like [KO:K01489] [EC:3.5.4.5]
108884063  cdab; cytidine deaminase b isoform X1 [KO:K01489] [EC:3.5.4.5]
108898223  cytidine deaminase [KO:K01489] [EC:3.5.4.5]
108902388  zgc:103586 isoform X2 [KO:K01489] [EC:3.5.4.5]
108900846  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
108894047  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
108888319  ribonucleoside-diphosphate reductase subunit M2 isoform X1 [KO:K10808] [EC:1.17.4.1]
108898139  rrm2b; ribonucleoside-diphosphate reductase subunit M2 B [KO:K10808] [EC:1.17.4.1]
108882220  ribonucleoside-diphosphate reductase subunit M2 isoform X1 [KO:K10808] [EC:1.17.4.1]
108891564  ribonucleoside-diphosphate reductase subunit M2 isoform X1 [KO:K10808] [EC:1.17.4.1]
108890024  LOW QUALITY PROTEIN: ribonucleoside-diphosphate reductase subunit M2-like [KO:K10808] [EC:1.17.4.1]
108893079  LOW QUALITY PROTEIN: glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial [KO:K16904] [EC:3.6.1.12]
108896839  HD domain-containing protein 2 isoform X1 [KO:K07023] [EC:3.1.3.89]
108873608  deoxycytidine kinase 2 [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
108883003  deoxycytidine kinase [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
108872710  deoxycytidylate deaminase [KO:K01493] [EC:3.5.4.12]
108878974  thymidylate kinase [KO:K00943] [EC:2.7.4.9]
108887906  deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial isoform X1 [KO:K01520] [EC:3.6.1.23]
108901402  thymidine phosphorylase isoform X1 [KO:K00758] [EC:2.4.2.4]
108894844  thymidine kinase 2, mitochondrial isoform X1 [KO:K00857] [EC:2.7.1.21]
108875678  thymidine kinase, cytosolic isoform X2 [KO:K00857] [EC:2.7.1.21]
108894996  thymidylate synthase [KO:K00560] [EC:2.1.1.45]
108884496  dpydb; dihydropyrimidine dehydrogenase [NADP(+)] [KO:K00207] [EC:1.3.1.2]
108887243  dihydropyrimidinase isoform X1 [KO:K01464] [EC:3.5.2.2]
108878574  beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
lcf00030  Pentose phosphate pathway
lcf00220  Arginine biosynthesis
lcf00250  Alanine, aspartate and glutamate metabolism
lcf00280  Valine, leucine and isoleucine degradation
lcf00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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