KEGG   PATHWAY: amex04620
Entry
amex04620                   Pathway                                
Name
Toll-like receptor signaling pathway - Astyanax mexicanus (Mexican tetra)
Description
Specific families of pattern recognition receptors are responsible for detecting microbial pathogens and generating innate immune responses. Toll-like receptors (TLRs) are membrane-bound receptors identified as homologs of Toll in Drosophila. Mammalian TLRs are expressed on innate immune cells, such as macrophages and dendritic cells, and respond to the membrane components of Gram-positive or Gram-negative bacteria. Pathogen recognition by TLRs provokes rapid activation of innate immunity by inducing production of proinflammatory cytokines and upregulation of costimulatory molecules. TLR signaling pathways are separated into two groups: a MyD88-dependent pathway that leads to the production of proinflammatory cytokines with quick activation of NF-{kappa}B and MAPK, and a MyD88-independent pathway associated with the induction of IFN-beta and IFN-inducible genes, and maturation of dendritic cells with slow activation of NF-{kappa}B and MAPK.
Class
Organismal Systems; Immune system
Pathway map
amex04620  Toll-like receptor signaling pathway
amex04620

Organism
Astyanax mexicanus (Mexican tetra) [GN:amex]
Gene
103028197  toll-like receptor 6 [KO:K05398]
103045101  toll-like receptor 2 type-2 [KO:K10159]
103044794  LOW QUALITY PROTEIN: toll-like receptor 2 type-2 [KO:K10159]
103042489  toll-like receptor 2 type-2 isoform X1 [KO:K10159]
103034769  tlr3; toll-like receptor 3 [KO:K05401]
111196020  toll-like receptor 4 [KO:K10160]
111196037  toll-like receptor 4 [KO:K10160]
103039990  toll-like receptor 4 [KO:K10160]
111195965  toll-like receptor 4 [KO:K10160]
103047589  toll-like receptor 5 [KO:K10168]
103027598  toll-like receptor 7 [KO:K05404]
103027915  toll-like receptor 8 [KO:K10170]
103023350  toll-like receptor 8 [KO:K10170]
103044235  cathepsin K [KO:K01371] [EC:3.4.22.38]
103036522  tlr9; toll-like receptor 9 isoform X2 [KO:K10161]
111194918  ras-related C3 botulinum toxin substrate 1-like [KO:K04392]
111192975  ras-related C3 botulinum toxin substrate 1-like [KO:K04392]
111192980  ras-related C3 botulinum toxin substrate 1-like [KO:K04392]
103023232  ras-related protein Rac1-like [KO:K04392]
103034053  ras-related C3 botulinum toxin substrate 1 [KO:K04392]
103032909  phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform [KO:K00922] [EC:2.7.1.153]
103045036  pik3cd; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform [KO:K00922] [EC:2.7.1.153]
103041606  pik3ca; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform [KO:K00922] [EC:2.7.1.153]
103022173  pik3cb; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform [KO:K00922] [EC:2.7.1.153]
111190801  LOW QUALITY PROTEIN: phosphatidylinositol 3-kinase regulatory subunit gamma-like [KO:K02649]
103035767  phosphatidylinositol 3-kinase regulatory subunit gamma-like [KO:K02649]
103029972  pik3r3; LOW QUALITY PROTEIN: phosphatidylinositol 3-kinase regulatory subunit gamma [KO:K02649]
103046618  pik3r1; phosphatidylinositol 3-kinase regulatory subunit alpha isoform X1 [KO:K02649]
103040659  akt1; RAC-alpha serine/threonine-protein kinase [KO:K04456] [EC:2.7.11.1]
103026930  RAC-alpha serine/threonine-protein kinase [KO:K04456] [EC:2.7.11.1]
103023390  akt2; RAC-beta serine/threonine-protein kinase isoform X1 [KO:K04456] [EC:2.7.11.1]
103040186  RAC-gamma serine/threonine-protein kinase-like [KO:K04456] [EC:2.7.11.1]
103024575  RAC-gamma serine/threonine-protein kinase [KO:K04456] [EC:2.7.11.1]
103030622  tollip; toll-interacting protein [KO:K05402]
103044166  myd88; myeloid differentiation primary response protein MyD88 [KO:K04729]
111190370  tirap; toll/interleukin-1 receptor domain-containing adapter protein [KO:K05403]
103022073  fadd; FAS-associated death domain protein [KO:K02373]
103021896  caspase-8-like [KO:K04398] [EC:3.4.22.61]
103036076  caspase-8-like [KO:K04398] [EC:3.4.22.61]
103036379  caspase-8-like [KO:K04398] [EC:3.4.22.61]
103037118  caspase-8-like isoform X1 [KO:K04398] [EC:3.4.22.61]
103046249  irak4; interleukin-1 receptor-associated kinase 4 [KO:K04733] [EC:2.7.11.1]
103044222  irak1; interleukin-1 receptor-associated kinase 1 [KO:K04730] [EC:2.7.11.1]
103021325  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
103038577  tab1; TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 [KO:K04403]
103032786  tab2; TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 isoform X1 [KO:K04404]
103039333  map3k7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
103043929  ikbkg; NF-kappa-B essential modulator isoform X1 [KO:K07210]
103033415  chuk; inhibitor of nuclear factor kappa-B kinase subunit alpha [KO:K04467] [EC:2.7.11.10]
103040024  ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
103038271  NF-kappa-B inhibitor alpha [KO:K04734]
103043190  nfkbia; NF-kappa-B inhibitor alpha isoform X1 [KO:K04734]
103038869  nfkb1; nuclear factor NF-kappa-B p105 subunit [KO:K02580]
103032041  putative transcription factor p65 homolog [KO:K04735]
103031259  map3k8; mitogen-activated protein kinase kinase kinase 8 [KO:K04415] [EC:2.7.11.25]
103028644  map2k1; dual specificity mitogen-activated protein kinase kinase 1 [KO:K04368] [EC:2.7.12.2]
103030512  map2k2; dual specificity mitogen-activated protein kinase kinase 2 [KO:K04369] [EC:2.7.12.2]
103041389  mitogen-activated protein kinase 1 [KO:K04371] [EC:2.7.11.24]
103047585  mapk1; mitogen-activated protein kinase 1 [KO:K04371] [EC:2.7.11.24]
111191499  LOW QUALITY PROTEIN: dual specificity mitogen-activated protein kinase kinase 6-like [KO:K04433] [EC:2.7.12.2]
103045018  map2k4; dual specificity mitogen-activated protein kinase kinase 4 isoform X1 [KO:K04430] [EC:2.7.12.2]
103042940  dual specificity mitogen-activated protein kinase kinase 4 isoform X1 [KO:K04430] [EC:2.7.12.2]
103024363  map2k7; dual specificity mitogen-activated protein kinase kinase 7 isoform X1 [KO:K04431] [EC:2.7.12.2]
103035641  mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
103035956  mitogen-activated protein kinase 12-like [KO:K04441] [EC:2.7.11.24]
103046996  mitogen-activated protein kinase 14A-like isoform X1 [KO:K04441] [EC:2.7.11.24]
103028137  mitogen-activated protein kinase 14A isoform X1 [KO:K04441] [EC:2.7.11.24]
103042110  mitogen-activated protein kinase 12-like [KO:K04441] [EC:2.7.11.24]
103043112  LOW QUALITY PROTEIN: mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
103040333  mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
103043065  LOW QUALITY PROTEIN: mitogen-activated protein kinase 10-like [KO:K04440] [EC:2.7.11.24]
103040580  mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
103035319  mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
103034138  mitogen-activated protein kinase 8A isoform X1 [KO:K04440] [EC:2.7.11.24]
103021920  transcription factor AP-1-like [KO:K04448]
103026868  jun; transcription factor AP-1 [KO:K04448]
103036705  proto-oncogene c-Fos-like [KO:K04379]
103043278  proto-oncogene c-Fos-like [KO:K04379]
107197750  proto-oncogene c-Fos-like [KO:K04379]
103042954  proto-oncogene c-Fos-like [KO:K04379]
103032568  tumor necrosis factor-like [KO:K03156]
103026214  interleukin-1 beta-like [KO:K04519]
111194997  interleukin-1 beta-like [KO:K04519]
111191914  interleukin-6-like [KO:K05405]
107197652  interleukin-12 subunit alpha-like [KO:K05406]
103025849  interleukin-12 subunit alpha [KO:K05406]
103041682  interleukin-12 subunit beta [KO:K05425]
103036896  interleukin-12 subunit beta-like [KO:K05425]
103028022  uncharacterized protein LOC103028022 [KO:K05425]
103036120  interleukin-8-like [KO:K10030]
103026712  interleukin-8-like [KO:K10030]
103036419  interleukin-8-like [KO:K10030]
103036716  interleukin-8-like [KO:K10030]
103029988  cxcl13; C-X-C motif chemokine 13 [KO:K10030]
111191210  C-C motif chemokine 3-like [KO:K05408]
103030647  TIR domain-containing adapter molecule 1-like [KO:K05842]
103045920  ripk1; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
103026301  irf5; interferon regulatory factor 5 [KO:K09446]
103045043  irf7; interferon regulatory factor 7 isoform X1 [KO:K09447]
103047687  ikbke; inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K07211] [EC:2.7.11.10]
103023014  tbk1; serine/threonine-protein kinase TBK1 isoform X1 [KO:K05410] [EC:2.7.11.10]
103023640  traf3; LOW QUALITY PROTEIN: TNF receptor-associated factor 3 [KO:K03174]
103032028  interferon regulatory factor 3-like [KO:K05411]
111194086  tumor necrosis factor receptor superfamily member 5-like isoform X1 [KO:K03160]
103022049  T-lymphocyte activation antigen CD80-like [KO:K05412]
103031198  interferon a3-like [KO:K05414]
111197617  interferon alpha-3-like [KO:K05414]
111196927  interferon tau-1-like [KO:K05414]
103046016  interferon alpha/beta receptor 2-like [KO:K05131]
103033818  jak1; tyrosine-protein kinase JAK1 [KO:K11217] [EC:2.7.10.2]
103044144  tyrosine-protein kinase JAK1-like [KO:K11217] [EC:2.7.10.2]
103044715  LOW QUALITY PROTEIN: non-receptor tyrosine-protein kinase TYK2-like [KO:K11219] [EC:2.7.10.2]
111194953  signal transducer and activator of transcription 1-alpha/beta-like [KO:K11220]
103028874  signal transducer and activator of transcription 1-alpha/beta [KO:K11220]
103031000  signal transducer and activator of transcription 1-like [KO:K11220]
103021407  signal transducer and activator of transcription 1-alpha/beta-like isoform X1 [KO:K11221]
103035258  interferon regulatory factor 8 isoform X1 [KO:K04693]
103028720  C-X-C motif chemokine 11-6-like [KO:K12671]
103030769  uncharacterized protein LOC103030769 [KO:K05416]
103042437  C-X-C motif chemokine 11-like [KO:K05416]
103027159  C-X-C motif chemokine 11-6-like [KO:K12672]
103027450  C-X-C motif chemokine 11-6-like [KO:K12672]
103028100  C-X-C motif chemokine 11-6-like [KO:K12672]
107197135  C-X-C motif chemokine 11-6-like [KO:K12672]
Reference
  Authors
Kawai T, Akira S.
  Title
TLR signaling.
  Journal
Semin Immunol 19:24-32 (2007)
DOI:10.1016/j.smim.2006.12.004
Reference
  Authors
O'Neill LA, Bowie AG.
  Title
The family of five: TIR-domain-containing adaptors in Toll-like receptor signalling.
  Journal
Nat Rev Immunol 7:353-64 (2007)
DOI:10.1038/nri2079
Reference
  Authors
Honda K, Taniguchi T.
  Title
IRFs: master regulators of signalling by Toll-like receptors and cytosolic pattern-recognition receptors.
  Journal
Nat Rev Immunol 6:644-58 (2006)
DOI:10.1038/nri1900
Reference
  Authors
Uematsu S, Akira S.
  Title
Toll-like receptors and Type I interferons.
  Journal
J Biol Chem 282:15319-23 (2007)
DOI:10.1074/jbc.R700009200
Reference
  Authors
Akira S, Uematsu S, Takeuchi O.
  Title
Pathogen recognition and innate immunity.
  Journal
Cell 124:783-801 (2006)
DOI:10.1016/j.cell.2006.02.015
Reference
  Authors
Yamamoto M, Takeda K, Akira S.
  Title
TIR domain-containing adaptors define the specificity of TLR signaling.
  Journal
Mol Immunol 40:861-8 (2004)
DOI:10.1016/j.molimm.2003.10.006
Reference
  Authors
Means TK, Hayashi F, Smith KD, Aderem A, Luster AD.
  Title
The Toll-like receptor 5 stimulus bacterial flagellin induces maturation and chemokine production in human dendritic cells.
  Journal
J Immunol 170:5165-75 (2003)
DOI:10.4049/jimmunol.170.10.5165
Reference
  Authors
Aderem A, Smith KD.
  Title
A systems approach to dissecting immunity and inflammation.
  Journal
Semin Immunol 16:55-67 (2004)
DOI:10.1016/j.smim.2003.10.002
Reference
  Authors
Banerjee A, Gerondakis S.
  Title
Coordinating TLR-activated signaling pathways in cells of the immune system.
  Journal
Immunol Cell Biol 85:420-4 (2007)
DOI:10.1038/sj.icb.7100098
Reference
  Authors
Loniewski KJ, Patial S, Parameswaran N.
  Title
Sensitivity of TLR4- and -7-induced NF kappa B1 p105-TPL2-ERK pathway to TNF-receptor-associated-factor-6 revealed by RNAi in mouse macrophages.
  Journal
Mol Immunol 44:3715-23 (2007)
DOI:10.1016/j.molimm.2007.04.002
Reference
  Authors
Arbibe L, Mira JP, Teusch N, Kline L, Guha M, Mackman N, Godowski PJ, Ulevitch RJ, Knaus UG.
  Title
Toll-like receptor 2-mediated NF-kappa B activation requires a Rac1-dependent pathway.
  Journal
Nat Immunol 1:533-40 (2000)
DOI:10.1038/82797
Reference
  Authors
Uematsu S, Akira S.
  Title
Toll-like receptors and innate immunity.
  Journal
J Mol Med 84:712-25 (2006)
DOI:10.1007/s00109-006-0084-y
Related
pathway
amex04010  MAPK signaling pathway
amex04060  Cytokine-cytokine receptor interaction
amex04120  Ubiquitin mediated proteolysis
amex04210  Apoptosis
KO pathway
ko04620   
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