KEGG   PATHWAY: amus03420
Entry
amus03420                   Pathway                                
Name
Nucleotide excision repair - Akanthomyces muscarius
Description
Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
Class
Genetic Information Processing; Replication and repair
Pathway map
amus03420  Nucleotide excision repair
amus03420

Other DBs
GO: 0006289
Organism
Akanthomyces muscarius [GN:amus]
Gene
LMH87_009080  uncharacterized protein [KO:K03657] [EC:5.6.2.4]
LMH87_008205  uncharacterized protein [KO:K03868] [EC:2.3.2.32]
LMH87_009885  hypothetical protein [KO:K10609]
LMH87_010559  hypothetical protein [KO:K10610]
LMH87_010538  hypothetical protein [KO:K10838]
LMH87_011417  hypothetical protein [KO:K10838]
LMH87_003900  hypothetical protein [KO:K10839]
LMH87_010477  hypothetical protein [KO:K10570]
LMH87_003484  hypothetical protein [KO:K10841]
LMH87_006045  hypothetical protein [KO:K03006] [EC:2.7.7.6]
LMH87_012011  hypothetical protein [KO:K03010] [EC:2.7.7.6]
LMH87_011602  hypothetical protein [KO:K03011]
LMH87_007224  hypothetical protein [KO:K03012]
LMH87_004989  hypothetical protein [KO:K03012]
LMH87_006909  hypothetical protein [KO:K03013]
LMH87_004127  hypothetical protein [KO:K03014]
LMH87_011479  hypothetical protein [KO:K03015]
LMH87_000647  hypothetical protein [KO:K03016]
LMH87_008310  uncharacterized protein [KO:K03017]
LMH87_006069  hypothetical protein [KO:K03007]
LMH87_001221  hypothetical protein [KO:K03009]
LMH87_002527  hypothetical protein [KO:K03008]
LMH87_004572  hypothetical protein [KO:K02202] [EC:2.7.11.22 2.7.11.23]
LMH87_011846  hypothetical protein [KO:K10842]
LMH87_009281  hypothetical protein [KO:K06634]
LMH87_004167  hypothetical protein [KO:K10843] [EC:5.6.2.4]
LMH87_009785  hypothetical protein [KO:K10844] [EC:5.6.2.3]
LMH87_011840  hypothetical protein [KO:K10845]
LMH87_009765  hypothetical protein [KO:K03141]
LMH87_000514  hypothetical protein [KO:K03142]
LMH87_008620  uncharacterized protein [KO:K03143]
LMH87_011097  hypothetical protein [KO:K03144]
LMH87_006024  hypothetical protein [KO:K10846]
LMH87_003245  hypothetical protein [KO:K10847]
LMH87_004858  hypothetical protein [KO:K07466]
LMH87_006648  hypothetical protein [KO:K10739]
LMH87_010862  hypothetical protein [KO:K10740]
LMH87_001818  hypothetical protein [KO:K10848] [EC:3.1.-.-]
LMH87_000569  hypothetical protein [KO:K10849]
LMH87_004339  hypothetical protein [KO:K02327] [EC:2.7.7.7]
LMH87_004350  hypothetical protein [KO:K02328]
LMH87_000674  hypothetical protein [KO:K03504]
LMH87_000456  hypothetical protein [KO:K03505]
LMH87_005432  hypothetical protein [KO:K02324] [EC:2.7.7.7]
LMH87_004060  hypothetical protein [KO:K02325] [EC:2.7.7.7]
LMH87_005572  hypothetical protein [KO:K04802]
LMH87_010208  hypothetical protein [KO:K10754]
LMH87_002723  hypothetical protein [KO:K10755]
LMH87_011496  hypothetical protein [KO:K10755]
LMH87_010206  hypothetical protein [KO:K10756]
LMH87_000486  hypothetical protein [KO:K10756]
LMH87_011707  hypothetical protein [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
  Authors
Sugasawa K.
  Title
[Molecular mechanism of mammalian nucleotide excision repair]
  Journal
Tanpakushitsu Kakusan Koso 46:893-901 (2001)
Reference
  Authors
Nakatsu Y.
  Title
[Transcription-coupled repair and Cockayne syndrome]
  Journal
Tanpakushitsu Kakusan Koso 46:908-15 (2001)
Reference
  Authors
Nakagawa N, Masui R, Kuramitsu S.
  Title
[Structure and function of DNA repair enzyme UvrB from Thermus thermophilus HB8]
  Journal
Tanpakushitsu Kakusan Koso 46:968-75 (2001)
Reference
  Authors
Kraemer KH, Patronas NJ, Schiffmann R, Brooks BP, Tamura D, DiGiovanna JJ.
  Title
Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: a complex genotype-phenotype relationship.
  Journal
Neuroscience 145:1388-96 (2007)
DOI:10.1016/j.neuroscience.2006.12.020
Reference
  Authors
Saldivar JS, Wu X, Follen M, Gershenson D.
  Title
Nucleotide excision repair pathway review I: implications in ovarian cancer and platinum sensitivity.
  Journal
Gynecol Oncol 107:S56-71 (2007)
DOI:10.1016/j.ygyno.2007.07.043
Reference
  Authors
Sugasawa K.
  Title
[DNA repair pathways involving Cul4A ubiquitin ligases]
  Journal
Tanpakushitsu Kakusan Koso 51:1339-44 (2006)
Reference
  Authors
Ito S, Ando D, Tanaka K.
  Title
[Cross-talk between DNA repair and transcription: molecular mechanism and disorders]
  Journal
Tanpakushitsu Kakusan Koso 52:1823-31 (2007)
Related
pathway
amus03020  RNA polymerase
amus04120  Ubiquitin mediated proteolysis
KO pathway
ko03420   
LinkDB

DBGET integrated database retrieval system