KEGG   PATHWAY: bmet03018
Entry
bmet03018                   Pathway                                
Name
RNA degradation - Bacillus methanolicus
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
bmet03018  RNA degradation
bmet03018

Other DBs
GO: 0006401
Organism
Bacillus methanolicus [GN:bmet]
Gene
BMMGA3_14640  eno; Enolase [KO:K01689] [EC:4.2.1.11]
BMMGA3_06355  pnp; Polyribonucleotide nucleotidyltransferase [KO:K00962] [EC:2.7.7.8]
BMMGA3_14625  rnr; Ribonuclease R [KO:K12573] [EC:3.1.13.1]
BMMGA3_01260  cshA; DEAD-box ATP-dependent RNA helicase CshA [KO:K05592] [EC:5.6.2.7]
BMMGA3_10925  ATP-dependent DNA helicase, RecQ family [KO:K03654] [EC:5.6.2.4]
BMMGA3_02700  recQ; putative ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
BMMGA3_16105  rho; Transcription termination factor Rho [KO:K03628]
BMMGA3_06495  rny; Ribonuclease Y [KO:K18682] [EC:3.1.-.-]
BMMGA3_05275  rnjA; Ribonuclease J 1 [KO:K12574] [EC:3.1.-.-]
BMMGA3_06400  rnjB; Ribonuclease J 2 [KO:K12574] [EC:3.1.-.-]
BMMGA3_17235  pfkP; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
BMMGA3_13085  pfkC; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
BMMGA3_01485  groL; 60 kDa chaperonin [KO:K04077] [EC:5.6.1.7]
BMMGA3_06560  hypothetical protein [KO:K03666]
BMMGA3_17195  hypothetical protein [KO:K03666]
BMMGA3_11775  ppk; Polyphosphate kinase [KO:K00937] [EC:2.7.4.1]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
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