KEGG   PATHWAY: but03018
Entry
but03018                    Pathway                                
Name
RNA degradation - Burkholderia pseudomallei TSV202
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
but03018  RNA degradation
but03018

Other DBs
GO: 0006401
Organism
Burkholderia pseudomallei TSV202 [GN:but]
Gene
X994_3151  NUDIX domain protein [KO:K08311] [EC:3.6.1.-]
X994_3702  ribonuclease, Rne/Rng family domain protein [KO:K08300] [EC:3.1.26.12]
X994_167  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
X994_6542  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
X994_1528  pnp; polyribonucleotide nucleotidyltransferase [KO:K00962] [EC:2.7.7.8]
X994_2020  hypothetical protein [KO:K11927] [EC:5.6.2.7]
X994_1603  DEAD/DEAH box helicase family protein [KO:K11927] [EC:5.6.2.7]
X994_1049  rnr; ribonuclease R [KO:K12573] [EC:3.1.13.1]
X994_2914  recQ; ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
X994_629  rho; transcription termination factor Rho [KO:K03628]
X994_3329  dnaK; chaperone protein DnaK [KO:K04043]
X994_3462  groL; chaperonin GroL [KO:K04077] [EC:5.6.1.7]
X994_4142  groL; chaperonin GroL [KO:K04077] [EC:5.6.1.7]
X994_1063  hfq; RNA chaperone Hfq [KO:K03666]
X994_651  hfq; RNA chaperone Hfq [KO:K03666]
X994_1298  ppk1; polyphosphate kinase 1 [KO:K00937] [EC:2.7.4.1]
X994_5847  ppk2; polyphosphate kinase 2 [KO:K22468] [EC:2.7.4.34]
X994_3335  pcnB; poly(A) polymerase family protein [KO:K00970] [EC:2.7.7.19]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
LinkDB

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