KEGG   PATHWAY: lcf00030
Entry
lcf00030                    Pathway                                
Name
Pentose phosphate pathway - Lates calcarifer (barramundi perch)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lcf00030  Pentose phosphate pathway
lcf00030

Module
lcf_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:lcf00030]
lcf_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:lcf00030]
lcf_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:lcf00030]
lcf_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:lcf00030]
Other DBs
GO: 0006098
Organism
Lates calcarifer (barramundi perch) [GN:lcf]
Gene
108877065  gpib; glucose-6-phosphate isomerase b [KO:K01810] [EC:5.3.1.9]
108885229  gpia; glucose-6-phosphate isomerase a [KO:K01810] [EC:5.3.1.9]
108876501  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
108900208  glucose-6-phosphate 1-dehydrogenase isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
108902654  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
108889991  LOW QUALITY PROTEIN: GDH/6PGL endoplasmic bifunctional protein [KO:K13937] [EC:1.1.1.47 3.1.1.31]
108876386  6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
108901558  rpe; ribulose-phosphate 3-epimerase isoform X1 [KO:K01783] [EC:5.1.3.1]
108877875  tktb; transketolase-like protein 2 [KO:K00615] [EC:2.2.1.1]
108886532  transketolase [KO:K00615] [EC:2.2.1.1]
108891653  transketolase [KO:K00615] [EC:2.2.1.1]
108887829  transaldolase [KO:K00616] [EC:2.2.1.2]
108889159  ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
108894035  sedoheptulokinase isoform X1 [KO:K11214] [EC:2.7.1.14]
108897554  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
108898990  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
108896156  ribokinase [KO:K00852] [EC:2.7.1.15]
108883822  phosphoglucomutase-1 [KO:K01835] [EC:5.4.2.2]
108897106  phosphoglucomutase-1 [KO:K01835] [EC:5.4.2.2]
108896551  phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
108882909  prps1b; ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
108892856  ribose-phosphate pyrophosphokinase 2 [KO:K00948] [EC:2.7.6.1]
108881118  regucalcin [KO:K01053] [EC:3.1.1.17]
108878771  probable gluconokinase isoform X1 [KO:K00851] [EC:2.7.1.12]
108899160  glycerate kinase [KO:K11529] [EC:2.7.1.165]
108884457  aldoab; aldolase a, fructose-bisphosphate, b [KO:K01623] [EC:4.1.2.13]
108876098  aldoca; fructose-bisphosphate aldolase C-A [KO:K01623] [EC:4.1.2.13]
108898144  fructose-bisphosphate aldolase A [KO:K01623] [EC:4.1.2.13]
108893551  aldocb; fructose-bisphosphate aldolase C-B isoform X1 [KO:K01623] [EC:4.1.2.13]
108899210  aldob; fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
108883270  fbp1b; fructose-1,6-bisphosphatase 1b [KO:K03841] [EC:3.1.3.11]
108878359  fructose-1,6-bisphosphatase 1 [KO:K03841] [EC:3.1.3.11]
108878361  fbp2; fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
108880468  LOW QUALITY PROTEIN: ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
108881444  pfkmb; phosphofructokinase, muscle b [KO:K00850] [EC:2.7.1.11]
108898303  pfkpa; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
108876477  pfkma; phosphofructokinase, muscle a [KO:K00850] [EC:2.7.1.11]
108880954  ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
lcf00010  Glycolysis / Gluconeogenesis
lcf00040  Pentose and glucuronate interconversions
lcf00052  Galactose metabolism
lcf00230  Purine metabolism
lcf00240  Pyrimidine metabolism
lcf00340  Histidine metabolism
lcf00630  Glyoxylate and dicarboxylate metabolism
lcf00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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