KEGG   PATHWAY: mjv04120
Entry
mjv04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Manis javanica (Malayan pangolin)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mjv04120  Ubiquitin mediated proteolysis
mjv04120

Other DBs
GO: 0016567
Organism
Manis javanica (Malayan pangolin) [GN:mjv]
Gene
108384536  UBB; polyubiquitin-B [KO:K04551]
108406016  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
108393689  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
108398834  UBA1; ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
108398869  SAE1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
108404677  UBA2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
108395823  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
108402847  UBA7; LOW QUALITY PROTEIN: ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
108404100  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
108407055  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
108384769  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
108392893  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
108393611  ubiquitin-conjugating enzyme E2 C-like [KO:K06688] [EC:2.3.2.23]
108393458  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
108394160  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
108394740  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
108390455  UBE2E1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
108401928  UBE2E3; ubiquitin-conjugating enzyme E2 E3 isoform X1 [KO:K20217] [EC:2.3.2.23]
108390452  ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
108386303  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
108393871  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
108401575  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
108392750  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
108387588  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
108400359  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
108409059  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
108398434  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
108384630  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
108408241  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
108390289  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
108389707  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
108405630  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
108398672  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X2 [KO:K10581] [EC:2.3.2.24]
108393880  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 isoform X2 [KO:K10582] [EC:2.3.2.23]
108384924  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
108390549  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
108391742  CDC34; ubiquitin-conjugating enzyme E2 R1 isoform X1 [KO:K02207] [EC:2.3.2.23]
108408679  UBE2R2; ubiquitin-conjugating enzyme E2 R2 isoform X1 [KO:K02207] [EC:2.3.2.23]
108388704  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
108408460  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
108391069  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
108395582  BIRC6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
108387602  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
108399879  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
108400396  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
108403137  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
108390219  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
108391264  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
108406620  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
108403086  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
108395989  TRIP12; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIP12 [KO:K10590] [EC:2.3.2.26]
108401737  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
108400562  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
108390110  UBR5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
108409993  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
108402321  HERC2; E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
108405615  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
108407545  HERC4; probable E3 ubiquitin-protein ligase HERC4 [KO:K10615] [EC:2.3.2.26]
108385111  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
108400722  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
108386123  STUB1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
108384635  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 isoform X1 [KO:K10598] [EC:5.2.1.8]
108408420  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
108400278  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
108394490  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
108409307  E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
108396704  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
108403924  CBLC; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
108407117  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
108390300  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
108384016  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X2 [KO:K04416] [EC:2.7.11.25]
108406951  COP1; E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
108384767  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
108389053  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
108389075  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
108391115  E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
108399158  BIRC7; baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
108406656  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
108394855  PIAS2; E3 SUMO-protein ligase PIAS2 [KO:K16063] [EC:2.3.2.-]
108400380  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
108408312  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X2 [KO:K16065] [EC:2.3.2.27]
108396390  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
118969682  E3 ubiquitin-protein ligase synoviolin-like isoform X1 [KO:K10601] [EC:2.3.2.27]
118969816  E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
108389449  E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
108386870  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
108394617  BRCA1; LOW QUALITY PROTEIN: breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
108396881  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
108401468  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
108398380  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
118969296  E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
108398499  TRIM37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
108394317  RBX1; E3 ubiquitin-protein ligase RBX1 isoform X1 [KO:K03868] [EC:2.3.2.32]
108386656  CUL1; cullin-1 [KO:K03347]
108406083  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
108408519  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
108383975  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
108402334  FBXW7; F-box/WD repeat-containing protein 7 isoform X2 [KO:K10260]
108385723  FBXO2; F-box only protein 2 isoform X1 [KO:K10099]
108401090  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
108392914  CUL2; cullin-2 [KO:K03870]
108400860  ELOC; elongin-C isoform X2 [KO:K03872]
108388379  ELOB; elongin-B [KO:K03873]
108399518  CUL3; cullin-3 isoform X1 [KO:K03869]
108383556  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
108397410  KLHL9; kelch-like protein 9 [KO:K10447]
108394818  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
108404732  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
108393206  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
108404397  CUL4B; cullin-4B isoform X1 [KO:K10609]
108398702  CUL4A; cullin-4A isoform X3 [KO:K10609]
108392382  DDB1; DNA damage-binding protein 1 [KO:K10610]
108388647  DDB2; LOW QUALITY PROTEIN: DNA damage-binding protein 2 [KO:K10140]
108399185  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
108402155  DET1; DET1 homolog isoform X1 [KO:K10571]
108389889  RNF7; RING-box protein 2 [KO:K10611]
108409924  CUL5; cullin-5 isoform X1 [KO:K10612]
108405554  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
108407802  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
108395048  CUL7; cullin-7 isoform X1 [KO:K10613]
108397446  FBXW8; F-box/WD repeat-containing protein 8 isoform X2 [KO:K10264]
108395237  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
108388302  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
108407024  CDC20; cell division cycle protein 20 homolog [KO:K03363]
108393274  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
108387401  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
108390143  CDC27; cell division cycle protein 27 homolog isoform X7 [KO:K03350]
108408026  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
108390373  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
108399966  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
108400540  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
108410323  CDC23; cell division cycle protein 23 homolog [KO:K03355]
108387425  ANAPC10; anaphase-promoting complex subunit 10 isoform X4 [KO:K03357]
118969876  anaphase-promoting complex subunit 10-like [KO:K03357]
108387305  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
108407530  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
108405092  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
108391758  ANAPC16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
mjv03050  Proteasome
KO pathway
ko04120   
LinkDB

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