KEGG   PATHWAY: mya03018
Entry
mya03018                    Pathway                                
Name
RNA degradation - Moritella yayanosii
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mya03018  RNA degradation
mya03018

Other DBs
GO: 0006401
Organism
Moritella yayanosii [GN:mya]
Gene
MORIYA_2502  nudH; nucleotide hydrolase [KO:K08311] [EC:3.6.1.-]
MORIYA_0971  rne; fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein [KO:K08300] [EC:3.1.26.12]
MORIYA_3036  rhlB; ATP-dependent RNA helicase [KO:K03732] [EC:5.6.2.7]
MORIYA_2530  eno; enolase [KO:K01689] [EC:4.2.1.11]
MORIYA_3777  pnp; polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [KO:K00962] [EC:2.7.7.8]
MORIYA_4175  rhlE; RNA helicase [KO:K11927] [EC:5.6.2.7]
MORIYA_0703  rhlE; ATP-dependent RNA helicase RhlE [KO:K11927] [EC:5.6.2.7]
MORIYA_1006  rhlE; ATP-dependent RNA helicase RhlE [KO:K11927] [EC:5.6.2.7]
MORIYA_1251  rhlE; RNA helicase [KO:K11927] [EC:5.6.2.7]
MORIYA_0686  rhlE; ATP-dependent RNA helicase RhlE [KO:K11927] [EC:5.6.2.7]
MORIYA_0697  rhlE; RNA helicase [KO:K11927] [EC:5.6.2.7]
MORIYA_3424  rnr; exoribonuclease R, RNase R [KO:K12573] [EC:3.1.13.1]
MORIYA_3633  deaD; ATP-dependent RNA helicase [KO:K05592] [EC:5.6.2.7]
MORIYA_1884  ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
MORIYA_3065  recQ; ATP-dependent DNA helicase [KO:K03654] [EC:5.6.2.4]
MORIYA_3038  rho; transcription termination factor [KO:K03628]
MORIYA_1419  pfkA; 6-phosphofructokinase I [KO:K00850] [EC:2.7.1.11]
MORIYA_2131  dnaK; chaperone Hsp70, co-chaperone with DnaJ [KO:K04043]
MORIYA_2588  groEL; chaperone Hsp60, peptide-dependent ATPase, heat shock protein [KO:K04077] [EC:5.6.1.7]
MORIYA_2565  hfq; RNA-binding protein Hfq [KO:K03666]
MORIYA_3863  pcnB; poly(A) polymerase I [KO:K00970] [EC:2.7.7.19]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
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