KEGG   PATHWAY: oda00310
Entry
oda00310                    Pathway                                
Name
Lysine degradation - Oryx dammah (scimitar-horned oryx)
Class
Metabolism; Amino acid metabolism
Pathway map
oda00310  Lysine degradation
oda00310

Module
oda_M00032  Lysine degradation, lysine => saccharopine => acetoacetyl-CoA [PATH:oda00310]
Other DBs
GO: 0006554
Organism
Oryx dammah (scimitar-horned oryx) [GN:oda]
Gene
120877291  AASS; alpha-aminoadipic semialdehyde synthase, mitochondrial isoform X1 [KO:K14157] [EC:1.5.1.8 1.5.1.9]
120864703  ALDH7A1; alpha-aminoadipic semialdehyde dehydrogenase [KO:K14085] [EC:1.2.1.31 1.2.1.8 1.2.1.3]
120854924  AADAT; kynurenine/alpha-aminoadipate aminotransferase, mitochondrial isoform X1 [KO:K00825] [EC:2.6.1.7 2.6.1.39]
120869272  DHTKD1; probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial isoform X1 [KO:K15791] [EC:1.2.4.-]
120852714  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
120878192  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
120864040  GCDH; glutaryl-CoA dehydrogenase, mitochondrial [KO:K00252] [EC:1.3.8.6]
120851587  HADHA; trifunctional enzyme subunit alpha, mitochondrial [KO:K07515] [EC:4.2.1.17 1.1.1.211]
120872222  EHHADH; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
120873816  ECHS1; enoyl-CoA hydratase, mitochondrial [KO:K07511] [EC:4.2.1.17]
120861742  HADH; hydroxyacyl-coenzyme A dehydrogenase, mitochondrial [KO:K00022] [EC:1.1.1.35]
120862679  hydroxyacyl-coenzyme A dehydrogenase, mitochondrial-like [KO:K00022] [EC:1.1.1.35]
120876215  ACAT1; acetyl-CoA acetyltransferase, mitochondrial [KO:K00626] [EC:2.3.1.9]
120862814  ACAT2; acetyl-CoA acetyltransferase, cytosolic [KO:K00626] [EC:2.3.1.9]
120875495  HYKK; hydroxylysine kinase isoform X1 [KO:K18201] [EC:2.7.1.81]
120863834  PHYKPL; 5-phosphohydroxy-L-lysine phospho-lyase isoform X1 [KO:K18202] [EC:4.2.3.134]
120866274  PIPOX; peroxisomal sarcosine oxidase isoform X1 [KO:K00306] [EC:1.5.3.1 1.5.3.7]
120851723  CAMKMT; calmodulin-lysine N-methyltransferase [KO:K18826] [EC:2.1.1.60]
120876324  KMT2A; histone-lysine N-methyltransferase 2A isoform X1 [KO:K09186] [EC:2.1.1.354]
120861279  histone-lysine N-methyltransferase 2D-like isoform X1 [KO:K09187] [EC:2.1.1.354]
120858214  histone-lysine N-methyltransferase 2D [KO:K09187] [EC:2.1.1.354]
120877744  KMT2C; histone-lysine N-methyltransferase 2C isoform X1 [KO:K09188] [EC:2.1.1.354]
120872497  KMT2B; histone-lysine N-methyltransferase 2B isoform X1 [KO:K14959] [EC:2.1.1.354]
120878163  KMT2E; inactive histone-lysine N-methyltransferase 2E isoform X1 [KO:K09189] [EC:2.1.1.354]
120877526  SETD1A; histone-lysine N-methyltransferase SETD1A [KO:K11422] [EC:2.1.1.354]
120871020  SETD1B; histone-lysine N-methyltransferase SETD1B [KO:K11422] [EC:2.1.1.354]
120870919  SETD7; histone-lysine N-methyltransferase SETD7 [KO:K11431] [EC:2.1.1.364]
120881601  LOW QUALITY PROTEIN: probable histone-lysine N-methyltransferase PRDM7 [KO:K20796] [EC:2.1.1.354]
120881717  PRDM9; LOW QUALITY PROTEIN: histone-lysine N-methyltransferase PRDM9 [KO:K20796] [EC:2.1.1.354]
120860773  histone-lysine N-methyltransferase PRDM9-like [KO:K20796] [EC:2.1.1.354]
120860775  histone-lysine N-methyltransferase PRDM9-like [KO:K20796] [EC:2.1.1.354]
120855721  ASH1L; histone-lysine N-methyltransferase ASH1L isoform X1 [KO:K06101] [EC:2.1.1.354]
120880064  SMYD2; N-lysine methyltransferase SMYD2 [KO:K11426] [EC:2.1.1.354 2.1.1.357]
120880314  SMYD3; histone-lysine N-methyltransferase SMYD3 isoform X1 [KO:K11426] [EC:2.1.1.354 2.1.1.357]
120851478  SMYD1; histone-lysine N-methyltransferase SMYD1 isoform X1 [KO:K11426] [EC:2.1.1.354 2.1.1.357]
120882096  SUV39H1; histone-lysine N-methyltransferase SUV39H1 [KO:K11419] [EC:2.1.1.355]
120869586  SUV39H2; histone-lysine N-methyltransferase SUV39H2 isoform X1 [KO:K11419] [EC:2.1.1.355]
120851867  EHMT1; histone-lysine N-methyltransferase EHMT1 isoform X1 [KO:K11420] [EC:2.1.1.355]
120870570  EHMT2; histone-lysine N-methyltransferase EHMT2 isoform X1 [KO:K11420] [EC:2.1.1.355]
120855906  SETDB1; histone-lysine N-methyltransferase SETDB1 isoform X1 [KO:K11421] [EC:2.1.1.366]
120883048  SETDB2; histone-lysine N-methyltransferase SETDB2 [KO:K18494] [EC:2.1.1.355]
120880549  PRDM2; PR domain zinc finger protein 2 isoform X1 [KO:K11432] [EC:2.1.1.355]
120867077  EZH1; histone-lysine N-methyltransferase EZH1 isoform X1 [KO:K17451] [EC:2.1.1.356]
120877871  EZH2; histone-lysine N-methyltransferase EZH2 isoform X1 [KO:K11430] [EC:2.1.1.356]
120883034  NUDT15; nucleotide triphosphate diphosphatase NUDT15 isoform X1 [KO:K11433] [EC:2.1.1.357]
120867663  histone-lysine N-methyltransferase SETMAR [KO:K11433] [EC:2.1.1.357]
120869845  histone-lysine N-methyltransferase SETMAR-like [KO:K11433] [EC:2.1.1.357]
120863859  NSD1; histone-lysine N-methyltransferase, H3 lysine-36 specific isoform X1 [KO:K15588] [EC:2.1.1.357]
120861831  NSD2; histone-lysine N-methyltransferase NSD2 [KO:K11424] [EC:2.1.1.357]
120865662  NSD3; histone-lysine N-methyltransferase NSD3 isoform X1 [KO:K11425] [EC:2.1.1.370 2.1.1.371]
120868180  SETD2; histone-lysine N-methyltransferase SETD2 [KO:K11423] [EC:2.1.1.359]
120864760  DOT1L; histone-lysine N-methyltransferase, H3 lysine-79 specific isoform X1 [KO:K11427] [EC:2.1.1.360]
120871058  KMT5A; N-lysine methyltransferase KMT5A isoform X1 [KO:K11428] [EC:2.1.1.361]
120864690  PRDM6; putative histone-lysine N-methyltransferase PRDM6 [KO:K20795] [EC:2.1.1.361]
120871894  KMT5C; histone-lysine N-methyltransferase KMT5C [KO:K11429] [EC:2.1.1.362]
120874128  KMT5B; histone-lysine N-methyltransferase KMT5B isoform X1 [KO:K11429] [EC:2.1.1.362]
120869247  MECOM; histone-lysine N-methyltransferase MECOM isoform X1 [KO:K04462] [EC:2.1.1.367]
120880661  PRDM16; histone-lysine N-methyltransferase PRDM16 isoform X1 [KO:K22410] [EC:2.1.1.367]
120881585  TMLHE; trimethyllysine dioxygenase, mitochondrial [KO:K00474] [EC:1.14.11.8]
120867411  ALDH3A2; aldehyde dehydrogenase family 3 member A2 isoform X1 [KO:K00128] [EC:1.2.1.3]
120852893  ALDH1B1; LOW QUALITY PROTEIN: aldehyde dehydrogenase X, mitochondrial [KO:K00128] [EC:1.2.1.3]
120871143  ALDH2; aldehyde dehydrogenase, mitochondrial [KO:K00128] [EC:1.2.1.3]
120872136  ALDH16A1; aldehyde dehydrogenase family 16 member A1 [KO:K00128] [EC:1.2.1.3]
120855495  ALDH9A1; 4-trimethylaminobutyraldehyde dehydrogenase [KO:K00149] [EC:1.2.1.47 1.2.1.3]
120876810  BBOX1; gamma-butyrobetaine dioxygenase isoform X1 [KO:K00471] [EC:1.14.11.1]
120880234  PLOD1; procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 [KO:K00473] [EC:1.14.11.4]
120858308  PLOD2; procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1 [KO:K13645] [EC:1.14.11.4]
120878960  PLOD3; multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 [KO:K13646] [EC:1.14.11.4 2.4.1.50 2.4.1.66]
120880467  COLGALT2; procollagen galactosyltransferase 2 [KO:K11703] [EC:2.4.1.50]
120864217  COLGALT1; procollagen galactosyltransferase 1 [KO:K11703] [EC:2.4.1.50]
Compound
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00037  Glycine
C00042  Succinate
C00047  L-Lysine
C00068  Thiamin diphosphate
C00136  Butanoyl-CoA
C00164  Acetoacetate
C00322  2-Oxoadipate
C00332  Acetoacetyl-CoA
C00408  L-Pipecolate
C00431  5-Aminopentanoate
C00449  N6-(L-1,3-Dicarboxypropyl)-L-lysine
C00450  (S)-2,3,4,5-Tetrahydropyridine-2-carboxylate
C00487  Carnitine
C00489  Glutarate
C00527  Glutaryl-CoA
C00739  D-Lysine
C00877  Crotonoyl-CoA
C00956  L-2-Aminoadipate
C00990  5-Aminopentanamide
C01087  (R)-2-Hydroxyglutarate
C01142  (3S)-3,6-Diaminohexanoate
C01144  (S)-3-Hydroxybutanoyl-CoA
C01149  4-Trimethylammoniobutanal
C01181  4-Trimethylammoniobutanoate
C01186  (3S,5S)-3,5-Diaminohexanoate
C01211  Procollagen 5-hydroxy-L-lysine
C01259  (3S)-3-Hydroxy-N6,N6,N6-trimethyl-L-lysine
C01672  Cadaverine
C02188  Protein lysine
C02727  N6-Acetyl-L-lysine
C03087  5-Acetamidopentanoate
C03196  (S)-2-Hydroxyglutarate
C03239  6-Amino-2-oxohexanoate
C03273  5-Oxopentanoate
C03366  5-Phosphooxy-L-lysine
C03656  (S)-5-Amino-3-oxohexanoic acid
C03793  N6,N6,N6-Trimethyl-L-lysine
C04020  D-Lysopine
C04076  L-2-Aminoadipate 6-semialdehyde
C04092  Delta1-Piperideine-2-carboxylate
C04487  5-(D-Galactosyloxy)-L-lysine-procollagen
C05161  (2R,5S)-2,5-Diaminohexanoate
C05231  L-3-Aminobutyryl-CoA
C05544  Protein N6-methyl-L-lysine
C05545  Protein N6,N6-dimethyl-L-lysine
C05546  Protein N6,N6,N6-trimethyl-L-lysine
C05548  6-Acetamido-2-oxohexanoate
C05825  2-Amino-5-oxohexanoate
C06157  [Dihydrolipoyllysine-residue succinyltransferase] S-glutaryldihydrolipoyllysine
C12455  5-Aminopentanal
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16741  L-Hydroxylysine
C22667  4-Carboxy-1-hydroxybutyryl-ThPP
Reference
PMID:11802770
  Authors
Vaz FM, Wanders RJ.
  Title
Carnitine biosynthesis in mammals.
  Journal
Biochem J 361:417-29 (2002)
DOI:10.1042/bj3610417
Reference
PMID:1682209
  Authors
Large PJ, Robertson A.
  Title
The route of lysine breakdown in Candida tropicalis.
  Journal
FEMS Microbiol Lett 66:209-13 (1991)
DOI:10.1111/j.1574-6968.1990.tb03998.x
Related
pathway
oda00020  Citrate cycle (TCA cycle)
oda00780  Biotin metabolism
KO pathway
ko00310   
LinkDB

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