KEGG   PATHWAY: php00630
Entry
php00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Phaeobacter porticola
Class
Metabolism; Carbohydrate metabolism
Pathway map
php00630  Glyoxylate and dicarboxylate metabolism
php00630

Module
php_M00373  Ethylmalonyl pathway [PATH:php00630]
php_M00621  Glycine cleavage system [PATH:php00630]
php_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:php00630]
Other DBs
GO: 0046487 0043648
Organism
Phaeobacter porticola [GN:php]
Gene
PhaeoP97_01001  acsA; acetyl-coenzyme A synthetase AcsA [KO:K01895] [EC:6.2.1.1]
PhaeoP97_01292  acs; acetyl-coenzyme A synthetase Acs [KO:K01895] [EC:6.2.1.1]
PhaeoP97_00962  glcB; malate synthase GlcB [KO:K01638] [EC:2.3.3.9]
PhaeoP97_02991  mdh; malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
PhaeoP97_01705  gltA1; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
PhaeoP97_00619  gltA2; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
PhaeoP97_01920  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
PhaeoP97_03228  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PhaeoP97_03514  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PhaeoP97_01200  fadA2; 3-ketoacyl-CoA thiolase FadA [KO:K00626] [EC:2.3.1.9]
PhaeoP97_03016  phaA; acetyl-CoA acetyltransferase PhaA [KO:K00626] [EC:2.3.1.9]
PhaeoP97_02944  fadA1; 3-ketoacyl-CoA thiolase FadA [KO:K00626] [EC:2.3.1.9]
PhaeoP97_03017  phaB_1; acetoacetyl-CoA reductase PhaB [KO:K00023] [EC:1.1.1.36]
PhaeoP97_02368  maoC like domain-containing protein [KO:K17865] [EC:4.2.1.55]
PhaeoP97_02969  crotonyl-CoA reductase [KO:K14446] [EC:1.3.1.85]
PhaeoP97_02319  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
PhaeoP97_02971  mutB; methylmalonyl-CoA mutase large subunit [KO:K14447] [EC:5.4.99.63]
PhaeoP97_00338  acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
PhaeoP97_02985  L-erythro-3-methylmalyl-CoA dehydratase [KO:K14449] [EC:4.2.1.148]
PhaeoP97_00458  putative citrate lyase subunit beta [KO:K08691] [EC:4.1.3.24 4.1.3.25]
PhaeoP97_02988  putative citrate lyase subunit beta [KO:K14451] [EC:3.1.2.30]
PhaeoP97_02120  pccA; propionyl-CoA carboxylase alpha chain [KO:K01965] [EC:6.4.1.3]
PhaeoP97_02126  pccB; propionyl-CoA carboxylase beta chain [KO:K01966] [EC:6.4.1.3 2.1.3.15]
PhaeoP97_02116  bhbA; methylmalonyl-CoA mutase BhbA [KO:K01847] [EC:5.4.99.2]
PhaeoP97_00533  glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
PhaeoP97_00534  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
PhaeoP97_00535  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
PhaeoP97_00046  Catalase [KO:K03781] [EC:1.11.1.6]
PhaeoP97_00677  gyaR2; glyoxylate reductase GyaR [KO:K00015] [EC:1.1.1.26]
PhaeoP97_02600  putative glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
PhaeoP97_00996  phosphoglycolate phosphatase-like protein [KO:K01091] [EC:3.1.3.18]
PhaeoP97_00422  putative hydrolase [KO:K01091] [EC:3.1.3.18]
PhaeoP97_00820  hydrolase, HAD-superfamily [KO:K01091] [EC:3.1.3.18]
PhaeoP97_02266  putative serine-glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
PhaeoP97_02664  putative glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PhaeoP97_01147  puuA1; gamma-glutamylputrescine synthetase PuuA [KO:K01915] [EC:6.3.1.2]
PhaeoP97_01149  puuA2; gamma-glutamylputrescine synthetase PuuA [KO:K01915] [EC:6.3.1.2]
PhaeoP97_01908  glnA; glutamine synthetase GlnA [KO:K01915] [EC:6.3.1.2]
PhaeoP97_02798  glutamine synthase-like protein [KO:K01915] [EC:6.3.1.2]
PhaeoP97_02329  putative serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PhaeoP97_01184  glyA; serine hydroxymethyltransferase GlyA [KO:K00600] [EC:2.1.2.1]
PhaeoP97_04065  gcvP; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
PhaeoP97_04067  gcvT; aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
PhaeoP97_04070  lpdA; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
PhaeoP97_01760  lpdA2; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
PhaeoP97_03001  lpd2; dihydrolipoyl dehydrogenase 2 [KO:K00382] [EC:1.8.1.4]
PhaeoP97_04066  gcvH_2; glycine cleavage system protein GcvH [KO:K02437]
PhaeoP97_02797  gcvH_1; glycine cleavage system protein GcvH [KO:K02437]
PhaeoP97_00146  putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
PhaeoP97_00710  eda; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PhaeoP97_00746  putative formate dehydrogenase H [KO:K00123] [EC:1.17.1.9]
PhaeoP97_02416  fdhF; formate dehydrogenase H [KO:K00123] [EC:1.17.1.9]
PhaeoP97_02417  nuoEF; NADH-quinone oxidoreductase subunits E/F (fused) [KO:K22515] [EC:1.17.1.9]
PhaeoP97_00747  fdhB; formate dehydrogenase iron-sulfur subunit [KO:K00124]
PhaeoP97_00748  putative formate dehydrogenase gamma subunit [KO:K00127]
PhaeoP97_00540  Esterase/lipase [KO:K01432] [EC:3.5.1.9]
PhaeoP97_02195  hutG_1; N-formylglutamate deformylase HutG [KO:K01458] [EC:3.5.1.68]
PhaeoP97_03539  hutG_2; N-formylglutamate deformylase HutG [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
php00010  Glycolysis / Gluconeogenesis
php00020  Citrate cycle (TCA cycle)
php00030  Pentose phosphate pathway
php00053  Ascorbate and aldarate metabolism
php00071  Fatty acid degradation
php00230  Purine metabolism
php00250  Alanine, aspartate and glutamate metabolism
php00260  Glycine, serine and threonine metabolism
php00620  Pyruvate metabolism
php00710  Carbon fixation by Calvin cycle
php00750  Vitamin B6 metabolism
php00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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