KEGG   PATHWAY: ppt00630
Entry
ppt00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudomonas putida S16
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppt00630  Glyoxylate and dicarboxylate metabolism
ppt00630

Module
ppt_M00012  Glyoxylate cycle [PATH:ppt00630]
ppt_M00621  Glycine cleavage system [PATH:ppt00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudomonas putida S16 [GN:ppt]
Gene
PPS_3512  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
PPS_3832  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
PPS_4548  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
PPS_1825  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
PPS_3217  malate synthase G [KO:K01638] [EC:2.3.3.9]
PPS_3378  malate synthase G [KO:K01638] [EC:2.3.3.9]
PPS_0352  malate synthase G [KO:K01638] [EC:2.3.3.9]
PPS_0655  lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PPS_3595  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
PPS_1677  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PPS_1921  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PPS_2394  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PPS_1827  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PPS_3224  beta-ketothiolase [KO:K00626] [EC:2.3.1.9]
PPS_4466  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PPS_0581  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PPS_3898  dehydratase [KO:K17865] [EC:4.2.1.55]
PPS_3213  glycolate oxidase, GlcD subunit [KO:K00104] [EC:1.1.99.14]
PPS_3374  glycolate oxidase, GlcD subunit [KO:K00104] [EC:1.1.99.14]
PPS_3214  glycolate oxidase, FAD binding subunit [KO:K11472] [EC:1.1.99.14]
PPS_3215  glycolate oxidase, iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
PPS_3376  glycolate oxidase, iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
PPS_2552  catalase domain-containing protein [KO:K03781] [EC:1.11.1.6]
PPS_0079  hydroperoxidase II [KO:K03781] [EC:1.11.1.6]
PPS_0477  catalase [KO:K03781] [EC:1.11.1.6]
PPS_4429  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
PPS_0819  glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
PPS_2313  glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
PPS_1540  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
PPS_0056  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
PPS_0412  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
PPS_3893  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PPS_2194  glutamine synthetase catalytic region [KO:K01915] [EC:6.3.1.2]
PPS_3155  glutamine synthetase type III [KO:K01915] [EC:6.3.1.2]
PPS_4893  glutamine synthetase type I [KO:K01915] [EC:6.3.1.2]
PPS_5036  glutamate-putrescine ligase [KO:K01915] [EC:6.3.1.2]
PPS_5037  glutamate-putrescine ligase [KO:K01915] [EC:6.3.1.2]
PPS_5148  glutamate-putrescine ligase [KO:K01915] [EC:6.3.1.2]
PPS_2779  glutamate-putrescine ligase [KO:K01915] [EC:6.3.1.2]
PPS_0668  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PPS_0315  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PPS_5045  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
PPS_1017  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
PPS_5047  glycine cleavage system aminomethyltransferase T [KO:K00605] [EC:2.1.2.10]
PPS_1015  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
PPS_3588  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PPS_3808  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PPS_5215  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PPS_5046  glycine cleavage system protein H [KO:K02437]
PPS_1018  glycine cleavage system protein H [KO:K02437]
PPS_3701  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
PPS_3370  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
PPS_3702  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
PPS_3371  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
PPS_3703  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
PPS_3372  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
PPS_2748  glycerate kinase [KO:K00865] [EC:2.7.1.165]
PPS_3704  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
PPS_2105  tartrate dehydratase, alpha subunit [KO:K03779] [EC:4.2.1.32]
PPS_2104  L(+)-tartrate dehydratase, beta subunit [KO:K03780] [EC:4.2.1.32]
PPS_1053  keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PPS_1797  putative formate dehydrogenase, delta subunit [KO:K00126] [EC:1.17.1.9]
PPS_0485  molybdopterin oxidoreductase Fe4S4 region [KO:K00123] [EC:1.17.1.9]
PPS_0486  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
PPS_1796  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
PPS_1795  NADH dehydrogenase (quinone) [KO:K00124]
PPS_0487  formate dehydrogenase, beta subunit [KO:K00124]
PPS_1794  formate dehydrogenase, gamma subunit [KO:K00127]
PPS_0488  formate dehydrogenase, gamma subunit [KO:K00127]
PPS_3263  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PPS_4288  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PPS_0320  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PPS_4874  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ppt00010  Glycolysis / Gluconeogenesis
ppt00020  Citrate cycle (TCA cycle)
ppt00030  Pentose phosphate pathway
ppt00053  Ascorbate and aldarate metabolism
ppt00071  Fatty acid degradation
ppt00230  Purine metabolism
ppt00250  Alanine, aspartate and glutamate metabolism
ppt00260  Glycine, serine and threonine metabolism
ppt00620  Pyruvate metabolism
ppt00750  Vitamin B6 metabolism
ppt00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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